LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272279g00005	ATGGTGAACGAAGGTTGCCTTCCAACTATGGATCTGCTACGATCGGAGCCCATGCAGCTGGTTCACTTGATCATTCCCATCGAAGCAGCTCATCGATCCATCTCCTACCTCGGCGATCTCGGCCTCGTTCAATTCAGAGATCTCAATGCAGATAGAAGCCCGTTCCAACGCTCATATGCTACTCAGATTAAAAGGTGTGGGGAAATGGAACGTACACTACGGTTATTTAAGGAACAAATGAAAAAGGCGGGCCTATCTCCCTCAATGCAGAATACCAGAAATAGTGTCATTGATCTGGATCATTTGGAGGTTAAACTTAGAGAACTTGAATCTGATCTGCTTGAGAATAAGGCAAATAATGAGAAGTTGCAACACACATACAACGAGCTGGTAGAATATAAGCTTGTTTTGGAGAAGGTTGGTGAGTATTTCTCTTCAGCACGAAACAGTGCGGTAGCTCAGCAGAAGGAGCATGAAGTCCAAACAACTGTTCATGGGTCTATTGACAGCCCATTATTACTAGAACAAGACACAACATCATATTCGGCTAAGCAGGTTAAGCTGGGTTTTATTAGTGGTCTTGTTCCAAGAGAAAAATCAATTCCTTTTGAAAGAATCTTATTTCGTGCAACAAGGGGGAATGTATTTATGAAGCAAGCCGTGGTTGAAAAACCTGTGCTTGATCCAACATCCGGAGAGAAGGTTGATAAAAATGTATTTGTAGTATTTTATTCTGGGGAGAGAGTTAAAAGTAAAATTCTGAAAATATGCGATGCTTTTGGAGCAACTCGCTATCCTTTCTCAGATGATCTGGGCAAACAATTTCAGATGATAACAGAGGTTTCTGGGAAACTTTCAGAGTTGAAGACTACCATCGATATTCAGAAAGTATTGCAGCGGGCAACTAGGGATTGCAACTCTCAGGTTGGAGCGATATTTCAGGTTTTACAGACAAAGGAATCACCGCCTACCTATTTTTACACAAACAAATTTACTTCTTCTTTTCAAGAAATTGTAGATGCTTACGGAATTGCCAAGTACCAGGAGGCAAATCCTGGTGTATACACAATCATCACGTTTCCGTTCCTTTTTGCCGTCATGTTTGGTGACTGGGGGCATGGCATATGCTTATTGCTGGCGGCTTTGTACCTCATAATCAGAGAGAAAAAATTTTCTAGTCAGAAACTTGGAGACATCATGCAAATGGCATTTGGCGGACGCTATGTTATTGCGATGATGGCACTCTTCTCAATCTACACTGGGTTCATATACAATGAATTTTTCTCTGTTCCATTTCCTCTATTTGCACCATCTGCCTATGCATGCCGTGATCCTTCATGCAGGGATGTTTATACAGCAGGTTTAATAAAAGTGAGAGACACCTACCCATTTGGCCTGGATCCTGTATGGCATGGCACTCGTAGTGAACTTCCATTTCTTAACTCTTTGAAGATGAAGATGTCTATTTTACTGGGAGTATGCCAGATGAATCTTGGAATCATATTGAGTTATTTTAATGCAAAATACTTTGGAAGCAGCATAGATATTTGGCACCAATTTGTTCCGCAGATGATATTCTTAAATAGCCTATTCGGCTACCTTTCGCTCATCATAATTGTCAAATGGTGTAGTGGATCACAGGCTGACTTATATCATGTGATGATATACATGTTCTTAAGTCCAACTGATGATTTGGGTGAAAACCAGCTCTTTGTTGGCCAGAAGTTTCTTCAAAGGCATCAAGGTCAATCTTACTCTCTGCTCCACAGCACGGATGATCCTATTGAATCAGGGTCACATAGCCCTCACGGCCATGAGGAGTTTGAGTTCAGTGAAGTTTTTGTGCACCAACTTATACATACAATAGAATTTGTGCTTGGTGCTGTGTCTAATACAGCTTCATATCTACGCCTATGGGCCCTCAGTCTAGCTCATTCAGAGTTGTCGAGTGTCTTCTATGACAAAGTTCTACTTATGGCCTGGGAGTTTAACAATACCATTATTCTTATTGTTGGCGTTATTGTTTTCATATGTGCAACTGTTGGTGTGTTACTGCTTATGGAAACTCTAAGCGCTTTCTTGCATGCTTTGAGACTTCACTGGGTAGAGTTCCAGAATAAATTTTATGTGGGAGATGGTTACAAGTTTGCCCCATTTTCATTTGCGTTACTTAGTGATGAGGATGAACTGTAG	2193	0.4109	MVNEGCLPTMDLLRSEPMQLVHLIIPIEAAHRSISYLGDLGLVQFRDLNADRSPFQRSYATQIKRCGEMERTLRLFKEQMKKAGLSPSMQNTRNSVIDLDHLEVKLRELESDLLENKANNEKLQHTYNELVEYKLVLEKVGEYFSSARNSAVAQQKEHEVQTTVHGSIDSPLLLEQDTTSYSAKQVKLGFISGLVPREKSIPFERILFRATRGNVFMKQAVVEKPVLDPTSGEKVDKNVFVVFYSGERVKSKILKICDAFGATRYPFSDDLGKQFQMITEVSGKLSELKTTIDIQKVLQRATRDCNSQVGAIFQVLQTKESPPTYFYTNKFTSSFQEIVDAYGIAKYQEANPGVYTIITFPFLFAVMFGDWGHGICLLLAALYLIIREKKFSSQKLGDIMQMAFGGRYVIAMMALFSIYTGFIYNEFFSVPFPLFAPSAYACRDPSCRDVYTAGLIKVRDTYPFGLDPVWHGTRSELPFLNSLKMKMSILLGVCQMNLGIILSYFNAKYFGSSIDIWHQFVPQMIFLNSLFGYLSLIIIVKWCSGSQADLYHVMIYMFLSPTDDLGENQLFVGQKFLQRHQGQSYSLLHSTDDPIESGSHSPHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLMAWEFNNTIILIVGVIVFICATVGVLLLMETLSAFLHALRLHWVEFQNKFYVGDGYKFAPFSFALLSDEDEL	730

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc272279g00005	730	PIRSF	ATP6V0A1	288	581	IPR026028	GO:0000220\|GO:0046961
	Stsc272279g00005	730	PIRSF	ATP6V0A1	8	295	IPR026028	GO:0000220\|GO:0046961
	Stsc272279g00005	730	PIRSF	ATP6V0A1	580	730	IPR026028	GO:0000220\|GO:0046961
	Stsc272279g00005	730	Pfam	V-type ATPase 116kDa subunit family	593	721	IPR002490	GO:0033179\|GO:0046961\|GO:1902600
	Stsc272279g00005	730	Pfam	V-type ATPase 116kDa subunit family	36	293	IPR002490	GO:0033179\|GO:0046961\|GO:1902600
	Stsc272279g00005	730	Pfam	V-type ATPase 116kDa subunit family	293	579	IPR002490	GO:0033179\|GO:0046961\|GO:1902600
	Stsc272279g00005	730	PANTHER	VACUOLAR PROTON ATPASES	293	578	IPR002490	GO:0033179\|GO:0046961\|GO:1902600
	Stsc272279g00005	730	Coils	Coil	99	126	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272279g00005	Stsc-Chr272279	26363	31474	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272279g00005	10	729	Primary Pumps ATPases(2)	AT4G39080	63.906	0.0	1039

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272279g00005	K02154		-	qsa:O6P43_018635	1114.75