Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272279g00002 ATGGCTGATTCAGGAGCGTCATCGTCGAGGAGGATGTGGTGCTCCGTCCCAGAGAAGCTTCAGCTGCATGGAGCCATGCTGGCACTCCAGTTTGGCTATGCAGGCTTTCATGTTGTCTCAAGAGCTGCCCTTAACATGGGTGTTAGCAAACTCGTCTTCCCTGTCTACCGCAACATCATTGCTTTTCTCCTCCTCCTTCCTTTTGCTTACTTCTTGGAGAAGAAGGAGAGGCCTGCCATTACTTTAAACTTCCTACTCCAGTTCTTTCTCCTCGCACTTGTCGGGATTACAGCGAACCAAGGGTTTTACTTGCTGGGATTGGACAACACATCTCCAACATTTGCATCAGCAATACAGAACTCAGTGCCAGCCATAACATTTCTGATGGCAGCCATACTGAGGATAGAGAAAGTGAGGCTGGACAGAAAAGACGGGGTGGCAAAGGTAGCCGGAACAGTGTTCTGTGTGGCGGGGGCGTCCGTCATAACACTGTACAAGGGCCCCACCATCTACAGCCCAGTACCACCACTGCAGAGCACAGTAGAATCAGAGGGCAAGAACTGGACCCTGGGGTGCCTCTACCTCATTGGCCATTGCTTGTCTTGGTCCGGCTGGCTGGTCCTGCAGGCACCGGTTCTCAAGAAGTACCCGGCTCGGCTCTCCGTGACTTCCTACACGTGCTTCTTTGGGCTGTTGCAATTCCTTGCCATTGCTATGGTGGTTGAAAGAGATGTGAATAAATGGATTTTCCAATCAGGTGCTGAAGTTTTCACTATTGTATACGCCGGAGTGGTGGCTTCCGGAATAGCCTTTGCGGTGCAGATATGGTGCATTGACAGAGGTGGCCCTGTCTTTGTCGCCGTATATCAGCCCGTTCAGACCCTTGTCGTCGCTGTCATGGCTTCCCTTGCTTTGGGTGAACAGTTCTACTTAGGCGGGATCATTGGAGCAGTTTTGATCGTAGTGGGTCTGTATCTAGTCCTGTGGGGTAAATCCGAAGAGAGGAAATTTGCATCTCAATCGCAGCATGCCATTGCTTCCATGCCAGCAGAGCACAGTAGCATCAGGCCTGCAAGCCATGCCAAACCATCTCTTACTCAGCCTCTTCTTCCTTCCTCAACAGAAAATGTTTGA 1134 0.5106 MADSGASSSRRMWCSVPEKLQLHGAMLALQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIAFLLLLPFAYFLEKKERPAITLNFLLQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAAILRIEKVRLDRKDGVAKVAGTVFCVAGASVITLYKGPTIYSPVPPLQSTVESEGKNWTLGCLYLIGHCLSWSGWLVLQAPVLKKYPARLSVTSYTCFFGLLQFLAIAMVVERDVNKWIFQSGAEVFTIVYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAVMASLALGEQFYLGGIIGAVLIVVGLYLVLWGKSEERKFASQSQHAIASMPAEHSSIRPASHAKPSLTQPLLPSSTENV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272279g00002 377 Pfam EamA-like transporter family 27 163 IPR000620 GO:0016020
Stsc272279g00002 377 Pfam EamA-like transporter family 190 328 IPR000620 GO:0016020
Stsc272279g00002 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 234 333 - -
Stsc272279g00002 377 PANTHER WAT1-RELATED PROTEIN 24 340 IPR030184 GO:0016020|GO:0022857
Stsc272279g00002 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
Stsc272279g00002 377 MobiDBLite consensus disorder prediction 351 377 - -
Stsc272279g00002 377 MobiDBLite consensus disorder prediction 359 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272279g00002 Stsc-Chr272279 9619 12218 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272279g00002 1 377 Nodulin-like Gene Family AT1G75500 74.235 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272279g00002 - - gmx:100798686 622.468