Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272278g00004 ATGCTACTATTCTTCTTCTTCTTCATTAGCCTTTCTCATGATACTGAAACTACTCTCAAGGTGCTTTTGGACGTGAAGTCATCGTTTCTTGAAGATCCATTGAATTTTCTTGCAGATTGGAGACACAACAACACAAACTACTGTTCATGGAATGGAATCACATGCAGTGATCTTGATAATACCACCGTGGTCGGAATCAACCTCTCTGCATCTTCACTCACTGGATCAATATCACCATCGCTTTCTCGTTTACAATCTCTTCTTCAACTTGACCTGTCTTCTAACCGTCTTGTGGGTCCCATACCACACACTCTAACAAACCTCACTTCATTGGAGTATCTCCTTCTGCTCTCCAACCAACTAACGGGACGAGTTCCCGCCGAGCTAGGTTCCATGATCAATCTCCGAGAACTCAAACTCGGTGATAACCAACTCACCGGATTTATTCCTCCCTCTCTTGGGAGCCTGGTCAAACTCAACTTTCTTGGACTCGCCCATAACAGACTCACCGGACCGATTCCAACTCAGCTGGGTCGACTCAGCGAGTTGCAGCAGCTGATGCTCCAGGGAAACAACTTGAACGGGACGGTTCCTGCCGAGTTGGGGAACTGCTCCAATCTCCAGACTCTGAACTTGTCAAGAAACAACCTCACTGGAGAGGTTCCACTTGAGTTTGAGAACTTGAGAGAGTTAAAGAACTTGAGTCTCTCTTGGAACCAATTTCATGGCAGTACTGTTCCTGCTAGTACTCTGTGTTCCAATGCATCAAAGTTGGAGGCTTTTTATATGTCAGATTGTGGGCTTCGTGGTGTGATTCCAGTTGAGTTAACTCAGTGTGCATCATTGAAGCTTCTTGATCTTTGCAATAACTCTCTCACTGGTTCAATCTCTCCCTTCCTCATTGGGAACCTCACAAAACTGGAGGAAATTCATTTGTACAGAAACAACTTGAATGGTTCTTTGCCTAGAGAGATTGGAAAGCTTGGGAATTTGACAAGTTTGTCACTTTTTCAGAATCAGTTATCTTGGCAGATTCCTTTGGAGATTGGTAACTGTTTAGGGTTGCAGTTGATTGATCTTTCTATGAACCAATTCAGTGGTGAAATTCCAATGACTATTGGTAGGCTTAAAGAGTTGGAGTTGCTTAAACTTTGGATCAATAACCTTGAGGGGAAGATTCCTGCCACACTTGGTAACTGTCACAAGATGAAGATGCTTGATCTGGCAGATAATCAGCTATCAGGTCCCATTCCTGTAACATTAGAGTTCTTGACAGGATTGGATCAGCTCTTACTAAACAACAATTCTCTTGAAGGTAACCTTCCTCACCAACTTGCAAATGTAGCAAACTTGACAATAGTGAACCTTTCAGGGAACAAGCTTAATGGCAGTTTAGCTCCATTGTGTAGCTCAAGTTCATTACTTTCCTTTGATGTAACTGATAATGAATTTGATGGTGTGATTCCCTTTCAATTGGGAAATTCACATTCTCTTGGAAGGCTGAGATTAGGGAACAATAGATTTTCTGGTGAAATTCCAAGGACCTTAGGGAAAATCACTGAAATGACATTGTTAGACTTATCAGGAAACTCACTCTCTGGATCAATACCAGATGAGCTTTCCTTGTGCAACAAGCTATCCTACATTGATCTGAAAAACAATACTCTGTCCGGACCGATACCGCAGTGGATCCGAAGCTTGCTGGAGTTGGGAGAGCTTAGCCTCTCATTCAATCAATTCTCTGGGTCTCTTCCATTAGGCCTATTCAATTGTACAAAATTGCTAGTACTCTGCCTTGAAGGAAATTCCCTCAATGGAATTCTCCCAGAGAATGTTGGTAATCTTACATCACTGAATGTCCTTAGACTTGGCCAAAACAATTTCTCTGGATCAATTCCTCATACAATTGGTAGGCTGGTCAATCTCTATGAGCTGCAGCTTTCAAGAAATGGATTCAATGGTGAGATTCCAATTGAGATTGGAAACCTCCAAAATCTTCAGAACATGTTGGACCTCAGTTACAACAACCTCTCTGGAGAGATCCCAAGTTCAATTGGGACATTGTTGAAATTGCAAGCTCTTAATCTTTCCCACAATCAACTCAGTGGTGAAGTCCCTCTGCTGTTTGGTGACGTGTCAAGCTTGGACCAACTTGATCTCTCTTACAATAATTTACAAGGCCAGCTGGATAAGCGATTATCCCGCTGGCCATTTCAAGCTTTTGCCGGGAACATTCGCCTTTGCGGGGCCTCTCTTAAGCCCTGCAAACGCCATGCTTCCGGCAATAAGCTATCAAGGTCATGGAGTCAGGCATCAGTAGTTATATTCACTACAGTTTCAACTGCAGTTGCAATAGCACTAATCTTTGCTGTTAGAATTTTCTTTAAAAAGAGGCCTGAATTTTTCAGCAAGGTTGGTGAAGTGAATTGCCTTTACTCCTCTTCTTCACATGCAAGGAAGAAATTTCTGTTTCCACTCAACATTGGTGGGAAGAGAGAATTCAGGTGGGAAGATATCATGGATGCCACAAACAATCTGAGTGAGGAATTCATCATTGGTTCCGGTGGTTCCGGGACGGTGTACCGAGCCGAATTGGCCAGCGGAGAGACAGTAGCTGTGAAGAAGATTTCATTCAAAGATGAATATCTCTTAAACAAGAGCTTTATAAGAGAAATGAAGACTCTGGGGAGGATAAGGCATAGACATCTGGTGAAACTGATTGGTTGTTGTAGCAACAGAAAAGCAGGATCATCAGGTTGGAATCTGCTGATATACGAGTACATGAAGAATGGGAGTGTGTGGGATTGGCTTCATGGAAGAACAATGAAGGGAAAAGGTGTTCTTGATTGGGATGCAAGGTTCAGAATTGCTGTGGGATTGGCTCATGGATTGGAGTACCTTCATCATGATTGTGTGCCAAAGATTATTCATAGGGACATCAAAACCAGTAACATATTGCTTGATTCCAACATGGAGGCACATTTGGGAGATTTTGGACTAGCAGAAGCACTCAATGACAATTGTGAGTCCAACACTGAGTCCAATTCCTGTTTTGCTGGTTCTTATGGTTACATAGCCCCAGAGTATGCATACACAATGAAGGCAACAGAGAAGAGTGATGTATACAGCATGGGGATTGTGTTTATGGAACTTGTAAGTGGCAAAATGCCAACAGATGAAGCTTTCAGTGGAAACATGGGCATGGTGAGATGGGTGGAGATGCACTTCAACAGCAGCCAAGATGCCATGCGTGAGGAGCTGATAGATCCTGAGCTGAAGCCACCTTTACCCGGGGAGGAGTTTGCTGCGTTCCAAGTGGTGGAGATAGCCATGCAGTGCACAAAAACTGCACCACAGGAGAGGCCTTCTTCAAGGCAAGTTTGTGATCTTCTTCGCCATGTTGCCAACAACAAAAAGGTCAACTTTGAGAAGAGCAACATTGGGAGTCAACACAAGTGA 3459 0.4331 MLLFFFFFISLSHDTETTLKVLLDVKSSFLEDPLNFLADWRHNNTNYCSWNGITCSDLDNTTVVGINLSASSLTGSISPSLSRLQSLLQLDLSSNRLVGPIPHTLTNLTSLEYLLLLSNQLTGRVPAELGSMINLRELKLGDNQLTGFIPPSLGSLVKLNFLGLAHNRLTGPIPTQLGRLSELQQLMLQGNNLNGTVPAELGNCSNLQTLNLSRNNLTGEVPLEFENLRELKNLSLSWNQFHGSTVPASTLCSNASKLEAFYMSDCGLRGVIPVELTQCASLKLLDLCNNSLTGSISPFLIGNLTKLEEIHLYRNNLNGSLPREIGKLGNLTSLSLFQNQLSWQIPLEIGNCLGLQLIDLSMNQFSGEIPMTIGRLKELELLKLWINNLEGKIPATLGNCHKMKMLDLADNQLSGPIPVTLEFLTGLDQLLLNNNSLEGNLPHQLANVANLTIVNLSGNKLNGSLAPLCSSSSLLSFDVTDNEFDGVIPFQLGNSHSLGRLRLGNNRFSGEIPRTLGKITEMTLLDLSGNSLSGSIPDELSLCNKLSYIDLKNNTLSGPIPQWIRSLLELGELSLSFNQFSGSLPLGLFNCTKLLVLCLEGNSLNGILPENVGNLTSLNVLRLGQNNFSGSIPHTIGRLVNLYELQLSRNGFNGEIPIEIGNLQNLQNMLDLSYNNLSGEIPSSIGTLLKLQALNLSHNQLSGEVPLLFGDVSSLDQLDLSYNNLQGQLDKRLSRWPFQAFAGNIRLCGASLKPCKRHASGNKLSRSWSQASVVIFTTVSTAVAIALIFAVRIFFKKRPEFFSKVGEVNCLYSSSSHARKKFLFPLNIGGKREFRWEDIMDATNNLSEEFIIGSGGSGTVYRAELASGETVAVKKISFKDEYLLNKSFIREMKTLGRIRHRHLVKLIGCCSNRKAGSSGWNLLIYEYMKNGSVWDWLHGRTMKGKGVLDWDARFRIAVGLAHGLEYLHHDCVPKIIHRDIKTSNILLDSNMEAHLGDFGLAEALNDNCESNTESNSCFAGSYGYIAPEYAYTMKATEKSDVYSMGIVFMELVSGKMPTDEAFSGNMGMVRWVEMHFNSSQDAMREELIDPELKPPLPGEEFAAFQVVEIAMQCTKTAPQERPSSRQVCDLLRHVANNKKVNFEKSNIGSQHK 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272278g00004 1152 Gene3D Ribonuclease Inhibitor 131 205 IPR032675 -
Stsc272278g00004 1152 ProSitePatterns Protein kinases ATP-binding region signature. 852 875 IPR017441 GO:0005524
Stsc272278g00004 1152 Gene3D Transferase(Phosphotransferase) domain 1 928 1150 - -
Stsc272278g00004 1152 ProSitePatterns Serine/Threonine protein kinases active-site signature. 975 987 IPR008271 GO:0004672|GO:0006468
Stsc272278g00004 1152 PANTHER LEUCINE RICH REPEAT KINASE 2 372 1138 - -
Stsc272278g00004 1152 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 808 927 - -
Stsc272278g00004 1152 Pfam Leucine rich repeat N-terminal domain 20 56 IPR013210 -
Stsc272278g00004 1152 Gene3D Ribonuclease Inhibitor 17 130 IPR032675 -
Stsc272278g00004 1152 Gene3D Phosphorylase Kinase; domain 1 811 927 - -
Stsc272278g00004 1152 SMART serkin_6 846 1136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272278g00004 1152 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 370 466 - -
Stsc272278g00004 1152 SUPERFAMILY L domain-like 352 463 - -
Stsc272278g00004 1152 Gene3D Ribonuclease Inhibitor 422 759 IPR032675 -
Stsc272278g00004 1152 Gene3D Ribonuclease Inhibitor 206 421 IPR032675 -
Stsc272278g00004 1152 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 15 175 - -
Stsc272278g00004 1152 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 176 256 - -
Stsc272278g00004 1152 SUPERFAMILY L domain-like 20 366 - -
Stsc272278g00004 1152 SMART LRR_typ_2 304 327 IPR003591 -
Stsc272278g00004 1152 SMART LRR_typ_2 228 253 IPR003591 -
Stsc272278g00004 1152 SMART LRR_typ_2 376 400 IPR003591 -
Stsc272278g00004 1152 SMART LRR_typ_2 132 156 IPR003591 -
Stsc272278g00004 1152 SMART LRR_typ_2 567 591 IPR003591 -
Stsc272278g00004 1152 SMART LRR_typ_2 448 472 IPR003591 -
Stsc272278g00004 1152 SMART LRR_typ_2 712 743 IPR003591 -
Stsc272278g00004 1152 SMART LRR_typ_2 688 711 IPR003591 -
Stsc272278g00004 1152 SMART LRR_typ_2 180 204 IPR003591 -
Stsc272278g00004 1152 SMART LRR_typ_2 519 543 IPR003591 -
Stsc272278g00004 1152 SMART LRR_typ_2 84 108 IPR003591 -
Stsc272278g00004 1152 SMART LRR_typ_2 615 639 IPR003591 -
Stsc272278g00004 1152 SMART LRR_typ_2 328 352 IPR003591 -
Stsc272278g00004 1152 ProSiteProfiles Protein kinase domain profile. 846 1136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272278g00004 1152 ProSiteProfiles Leucine-rich repeat profile. 206 227 IPR001611 GO:0005515
Stsc272278g00004 1152 SUPERFAMILY L domain-like 467 752 - -
Stsc272278g00004 1152 Pfam Leucine rich repeat 182 241 IPR001611 GO:0005515
Stsc272278g00004 1152 Pfam Leucine rich repeat 281 341 IPR001611 GO:0005515
Stsc272278g00004 1152 Pfam Protein kinase domain 851 1128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272278g00004 1152 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 297 369 - -
Stsc272278g00004 1152 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 467 759 - -
Stsc272278g00004 1152 FunFam Leucine-rich repeat receptor-like protein kinase 928 1148 - -
Stsc272278g00004 1152 SUPERFAMILY Protein kinase-like (PK-like) 824 1131 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272278g00004 Stsc-Chr272278 18871 23049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272278g00004 33 1136 Receptor kinase-like Gene Family AT1G73080 35.607 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc272278g00004 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272278g00004 - - gmx:100797153 1301.96