Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272278g00003 ATGGTTCTGAGGGACCGTAACCACCGAGGTGATGGATGCAGAGAAAGCAATGTGGTTAATAAGGCCACACAAGCTGCTCTTCAGAGGAACATCAAGAACTTCGTCATGGACCACCTTAACATGTCCATGTCCATCTCCGACGAGAACAATTCTCCACATTGGGTTTCCAACAATGACAATAACCACAACCATCATCGCCGCCACCACCGTCACCGCCACAATCTTCATCTCTCAAGTACCAGCCATGGCATGGACACGGATGAATCCTCATTGAGCTCTTTGATTAGCCCCAGACACACCCAGATTCTTGATCGCTGGGCTGCCAAACAAGCCCGGGAGATTGTTTCCAATTTAGAGAGTGAAGCTGGGTTGTTGTCAATGGATGATAACAACAAAGAACTTGGCAATAAATGTATAGATATCTCCAACCTTGCTGCTTCTTCACTTGTTCAAATATGGGAGAAGAGGATCGGTGGATCGAAACCGGAAACAAATGCTGCTTCTAATGGCGCCAAAAATGATGCTGCTGGTGCTGCTTCTAATTGTGAGTCTGAAGCAGGGGAATCATCCTGCGCCGTGGCGAACGAGGACTGGGAAACACATAGTGATGACCAGTCCTTTTCTTCGCCACAGTCGCGGTGGTCCTCCTGCGAGACTGCAACATCAGAGGACAGAGAGAGAGACAGAGAAAGAGACAGGGTTTCTGTAGCAGACATAATCAAGAGGCTAACCACAACAAGTGTCCATGGCGATGACAATGAATCTGAAGGATTTGTTAGCAGCGTGACAAGCTCTCCTTGCAGAGATTTGGCACCCGAGATTTCGGATAGGAGGGCTTTTGCCCTGATGCTTGGTGCCCCCGGAAGGATTCGAGGGCGCCGGGTTTTCACCGATATGCTTATGCAGCTGGAGAGGGACCGCCGAGGGGAGCTTAACCACCTGGCAGAGCGCCGAGCCGTGTCGAGGTTCCCTCAGAAAGGTCGAATTCAGTCATTGCTTAGACTAAGATTGTTGCAACGGAATGCAGCTGCTGAGAATGATCATCTATCTCAACAGAAATCAACATTATCTAGACAGAACAAACAGCCACAACAATCTAAAATTGTTATGGAGAAACTAAGGGAAAAGTTTAACACCGGAGTTGTTGAACACAGAAATGCGGACCAGGCAGAAGCAGCTCACCCAACGATGTCACGAACACAGACAGTTACCGATCCTGTGTCGTCAGATAAGTCCGTCGCGGCTACTCAACCGAGAGAAGGCATTTGCAACCAGACTGTTGTTCGTGAGACTGCTAATAGCTCTAGAGAATCTACACAAGTAACATTCTCTGAGACTAATGCAGATCAAAATAAAGAGAAAGAACATGCAAGTTCACATGTCACACTGCAAGAAACACTTGCGGAGGCTCATAATGATGATTGCTATGAAACTCCTAAGGCTCATAATAATGATTGCTATGAAACTCCTAAGGCAATGATATCGGTGGCTGATTGGGGCGATAATGAGATTGCAAACGAGGCAGAGTCATGTAAACAACAGCATGCTGTGGATTTGGTAGAAACCACATATGAAGATGCCATAGAAATGGGAGATGCAAGAGACCAACACTTTGATGAAAGTAATTATGATGATATTTTTGATGAGGTAGAGGCCATGGATCAGAGTTATGATGCAAGTAGTTATGACTGGATCAGCGAAATTTCTCGGCCGAGGAGCTACTGGGAAGAGCGTAGGCAAGCATGGTACAAAGAGATTCTTGACACTGCTTCAGAAAAGGAGGATATACGTGTTCTCCTAGAAAGAAAAACAGTCTCGACTTTCCTTTCGAGCAGCTTCCGGGCGACCATGGATAGGTTGATTAACTCTCACAAGGGAACACAAACACAACTAGAAAATTGTCAAGATGATGAGGATGACAACAACCAAATTCTGATGGCGTATCTACAAGAACGCATGCGTTCTGCAAAAGCTCCTCAAGAAGATGAACAAGAGAGAGGTGAAGAGGAGGAAAACCAAGACGAGAGGCAGAATGCGAGAGAAGAGCAGGAGCGGATGCATGAAGATGTTGTCTATTTTCAACAATCCTCATTCCCATGCCCTTCAAGAACATGGAGTTACAAAGACAATGAAACCTGTGATGATTCTGTATATGCATGTCCATCTGCATCTGCATACTCTCCTCCGCACTCACAACCCTCTCATTGTCAATCATCGTATCAGAATAATACGCGAAGTTCTTCACCGCCTAATCATCATTCAATTGAAATGGAACTCATCTATGATTTGAGAGGACAAATGGAGCAACTTCATCGCGAGATGTCTGAGCTAAGGAAATCGATAAAGAGCTGCATCGATATGCAGATGCAGATGCAATTGCAACAACAATCCATGGTCCAAACAGTTAACAAAGAAGAAAACAGAACAGACAAGAAGTCACCAAAGAAAGGCAACTGCTGTATATGCCATGAAGAGAAAGCTGACTCAATTTTATACAGGTGTGGGCACATGTGTGCGTGTCTAAAGTGTGCCAATGAGCTGCAATGGAATGGTGGAAAGTGTCCAATTTGTCGAGCCAAAATATTAGATGTTGTTCGAGTAATACATTGA 2610 0.4533 MVLRDRNHRGDGCRESNVVNKATQAALQRNIKNFVMDHLNMSMSISDENNSPHWVSNNDNNHNHHRRHHRHRHNLHLSSTSHGMDTDESSLSSLISPRHTQILDRWAAKQAREIVSNLESEAGLLSMDDNNKELGNKCIDISNLAASSLVQIWEKRIGGSKPETNAASNGAKNDAAGAASNCESEAGESSCAVANEDWETHSDDQSFSSPQSRWSSCETATSEDRERDRERDRVSVADIIKRLTTTSVHGDDNESEGFVSSVTSSPCRDLAPEISDRRAFALMLGAPGRIRGRRVFTDMLMQLERDRRGELNHLAERRAVSRFPQKGRIQSLLRLRLLQRNAAAENDHLSQQKSTLSRQNKQPQQSKIVMEKLREKFNTGVVEHRNADQAEAAHPTMSRTQTVTDPVSSDKSVAATQPREGICNQTVVRETANSSRESTQVTFSETNADQNKEKEHASSHVTLQETLAEAHNDDCYETPKAHNNDCYETPKAMISVADWGDNEIANEAESCKQQHAVDLVETTYEDAIEMGDARDQHFDESNYDDIFDEVEAMDQSYDASSYDWISEISRPRSYWEERRQAWYKEILDTASEKEDIRVLLERKTVSTFLSSSFRATMDRLINSHKGTQTQLENCQDDEDDNNQILMAYLQERMRSAKAPQEDEQERGEEEENQDERQNAREEQERMHEDVVYFQQSSFPCPSRTWSYKDNETCDDSVYACPSASAYSPPHSQPSHCQSSYQNNTRSSSPPNHHSIEMELIYDLRGQMEQLHREMSELRKSIKSCIDMQMQMQLQQQSMVQTVNKEENRTDKKSPKKGNCCICHEEKADSILYRCGHMCACLKCANELQWNGGKCPICRAKILDVVRVIH 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272278g00003 869 Coils Coil 760 787 - -
Stsc272278g00003 869 MobiDBLite consensus disorder prediction 671 686 - -
Stsc272278g00003 869 Coils Coil 664 689 - -
Stsc272278g00003 869 SUPERFAMILY RING/U-box 818 863 - -
Stsc272278g00003 869 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 790 868 IPR013083 -
Stsc272278g00003 869 Pfam Zinc finger, C3HC4 type (RING finger) 816 863 - -
Stsc272278g00003 869 MobiDBLite consensus disorder prediction 388 407 - -
Stsc272278g00003 869 MobiDBLite consensus disorder prediction 430 460 - -
Stsc272278g00003 869 MobiDBLite consensus disorder prediction 723 752 - -
Stsc272278g00003 869 CDD mRING-HC-C3HC5_NEU1 816 867 - -
Stsc272278g00003 869 MobiDBLite consensus disorder prediction 247 267 - -
Stsc272278g00003 869 MobiDBLite consensus disorder prediction 250 267 - -
Stsc272278g00003 869 ProSiteProfiles Zinc finger RING-type profile. 819 858 IPR001841 -
Stsc272278g00003 869 MobiDBLite consensus disorder prediction 204 218 - -
Stsc272278g00003 869 MobiDBLite consensus disorder prediction 198 233 - -
Stsc272278g00003 869 MobiDBLite consensus disorder prediction 393 407 - -
Stsc272278g00003 869 MobiDBLite consensus disorder prediction 653 686 - -
Stsc272278g00003 869 PANTHER BNAC05G24000D PROTEIN 2 867 - -
Stsc272278g00003 869 MobiDBLite consensus disorder prediction 430 447 - -
Stsc272278g00003 869 MobiDBLite consensus disorder prediction 161 181 - -
Stsc272278g00003 869 MobiDBLite consensus disorder prediction 725 752 - -
Stsc272278g00003 869 MobiDBLite consensus disorder prediction 346 365 - -
Stsc272278g00003 869 MobiDBLite consensus disorder prediction 219 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272278g00003 Stsc-Chr272278 13738 17319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272278g00003 819 867 C3H Transcription Factor Family AT3G06140 40.816 5.25e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272278g00003 - - ahf:112741787 1177.93