Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272277g00003 ATGGAATATAAACTGAATTCTTCTTCAACAATTCCAATCCATGTTCACACAAAGATCTCAAATTCTCCACCTCCTTCTTCTTCATCTCCAAACTCACAATCTCAATCTCAATCTCCAACATCCTCTGCTGCCCCATCGCCTCCTCCTCTTCCTCCGCCTCCTGTGGTGGTCAGCCCTTGCGCCGCCTGCAAGATCCTCCGCCGCCGCTGCGTTGAGAAGTGTGTTCTTGCTCCTTACTTTCCTCCAACTGATCCACTCAAGTTCACCATTGCACATAGAGTCTTTGGAGCAAGTAACATTATCAAGTTCTTGCAGGAACTTCCAGAAAGCCAAAGGGCAGATGCAGTGAGCAGCATGGTGTATGAAGCAAATGCAAGAATTAGGGACCCAGTTTATGGTTGTGCAGGAGCAATTTGCCAACTCCAAAAGCAAGTTAGTGAGCTTCAAGCACAATTGGCAAAAGCACAAGCTGAGCTGGTTAACATGCACTGCCAACAAGCCAATTTGGTTGCACTCATTTGCATGGAAATGAGTAGTAGTAGTACTCAATTATCATCTTCACAAGAACAACAACAACACATGATGATGATTCAGCCTCAGAATAATAATAATAATAATAATCATGTTGATATGACTTGCTTCATTGATGACAACAATCTTGCTTCTGCTTGGGAGCCTCTATGGACATGA 690 0.4377 MEYKLNSSSTIPIHVHTKISNSPPPSSSSPNSQSQSQSPTSSAAPSPPPLPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMHCQQANLVALICMEMSSSSTQLSSSQEQQQHMMMIQPQNNNNNNNHVDMTCFIDDNNLASAWEPLWT 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272277g00003 229 ProSiteProfiles LOB domain profile. 58 159 IPR004883 -
Stsc272277g00003 229 Pfam Lateral organ boundaries (LOB) domain 59 156 IPR004883 -
Stsc272277g00003 229 MobiDBLite consensus disorder prediction 1 41 - -
Stsc272277g00003 229 Coils Coil 138 165 - -
Stsc272277g00003 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 58 201 - -
Stsc272277g00003 229 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272277g00003 Stsc-Chr272277 10287 12322 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272277g00003 55 229 AS2 family AT1G07900 64.045 3.77e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc272277g00003 LOB 3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272277g00003 - - qsa:O6P43_005075 263.077