Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272276g00001 ATGTCTAATATAAGCAGATCATCAAGGCAGCGATCTGAGTCTACAAGGATCTCCGACGATCAAATCGTCCAACTAGTCTCCAAGTTACGCCAACTTGTTCCAGAGATTCGCACTCGCCGCTCAAACAAGGTATCGGCTTCAAAGGTGCTGCAAGAGACTTGCAATTACATAAAAAACTTACACAGAGAGGTTGATGACTTAAGCGAGCGTTTGGCTCAGTTGTTATCCACAATTGATGCTGATAGTGCTGAAGCTGCCATCATTAGGAGCTTACTTAGCAACTAA 285 0.4386 MSNISRSSRQRSESTRISDDQIVQLVSKLRQLVPEIRTRRSNKVSASKVLQETCNYIKNLHREVDDLSERLAQLLSTIDADSAEAAIIRSLLSN 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272276g00001 94 CDD bHLH_AtPRE_like 17 77 - -
Stsc272276g00001 94 PANTHER TRANSCRIPTION FACTOR PRE 5 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Stsc272276g00001 94 Coils Coil 50 84 - -
Stsc272276g00001 94 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Stsc272276g00001 94 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 79 IPR036638 GO:0046983
Stsc272276g00001 94 Gene3D - 2 89 IPR036638 GO:0046983
Stsc272276g00001 94 FunFam Transcription factor ILI6 6 89 - -
Stsc272276g00001 94 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272276g00001 Stsc-Chr272276 8505 9586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272276g00001 14 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 71.250 2.84e-35 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc272276g00001 HLH 2.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272276g00001 - - gmx:100794486 141.739