Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272269g00004 ATGAGTGTTTGCTGTCCTTTTAGTCAGTTTTCAATAAGTGCTGTTGTCTTGAAGGGTCGTACTCCCCTGTTGATGAGCAGTAACAACGTCTATGGCCTTTGGTCTCAAGGAATATCCAGTTCATATTCTTCCAGTTTGTTCCCTTTGCAGCCGGAGGTAAATCATGTTGGTCTTTCTTGTTGCACAAGATCTGCTATGGGCCAAACAATAAGAGGTTACCTTGGAACATGCTGCTCCAAGCAAAAGGGAAACCTTCAAATTAGTAGTTCTATAGCACATCGGAAGAGGCATCATGAAATATCATTGGCATGCCAAAGTTTGAATATGAGGATTTTGGTACCTAAACAAAAAAAGCTTCCCAAAGTTAAGTGTAGTGTAGGACCGGTATCTTGGCCACGTGGATGTGCATCAGTTGGCTTGATACTTGGATTACTTGTATGCAATTTAAGCTCTGAACCTGTATATGCTGACACAGATCCTGATAATGGAAGGAGAAATGATCAAAACATGTGCGAATCAAATGTAACGTTATCGCATGGGAAGAAAGTTTACACTGACTATTCTGTAATTGGAATACCTGGGGATGGAGGATGTTTATTCCGGTCTGTTGCTCATGGGGCTTGCTTGAGGTCTGGAAAAGCTCCTCCCAGTGAAAGCCATCAGAGAGAATTGGCAGATGAATTACGCAACAAAGTTGCTGATGAGTTTATCAAAAGAAGGGAAGAGACAGAATGGTTTATTGAAGGTGATTTTGATACATATATTTCACAAATAAGGAAGCCTCATGTTTGGGGAGGTGAGCCTGAATTGTTCATTGCTTCACATGTCTTGAAGATGCCAATCACAGTTTACATGTATGATAGGGATGCTGGTGGCTTGATATCGATTGCTGAGTATGGCCAAGAATATGGCAAGGAGAATCCAATTAGAGTTCTCTACCATGGATTTGGCCATTATGATGCACTGGAGATCCCTAGAAGGAAGGGTCCTAAACCAAGGCTGTAA 1005 0.4169 MSVCCPFSQFSISAVVLKGRTPLLMSSNNVYGLWSQGISSSYSSSLFPLQPEVNHVGLSCCTRSAMGQTIRGYLGTCCSKQKGNLQISSSIAHRKRHHEISLACQSLNMRILVPKQKKLPKVKCSVGPVSWPRGCASVGLILGLLVCNLSSEPVYADTDPDNGRRNDQNMCESNVTLSHGKKVYTDYSVIGIPGDGGCLFRSVAHGACLRSGKAPPSESHQRELADELRNKVADEFIKRREETEWFIEGDFDTYISQIRKPHVWGGEPELFIASHVLKMPITVYMYDRDAGGLISIAEYGQEYGKENPIRVLYHGFGHYDALEIPRRKGPKPRL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272269g00004 334 FunFam OTU domain-containing protein 171 329 - -
Stsc272269g00004 334 ProSiteProfiles OTU domain profile. 187 325 IPR003323 -
Stsc272269g00004 334 Pfam OTU-like cysteine protease 193 319 IPR003323 -
Stsc272269g00004 334 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 165 324 - -
Stsc272269g00004 334 CDD OTU_plant_OTU4-like 186 322 - -
Stsc272269g00004 334 Gene3D - 171 329 - -
Stsc272269g00004 334 SUPERFAMILY Cysteine proteinases 186 322 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272269g00004 Stsc-Chr272269 24026 27967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272269g00004 192 331 C2H2 Transcription Factor Family AT1G50670 27.660 4.20e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272269g00004 - - aip:107625481 603.594