Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272269g00003 ATGCTTCAACAGGGTCGTACTCCCCTGTTGATGAGCAGTAACAACGTCTATGGCCTTTGGTCTCAAGGAATATCCAGTTCATATTCTTCCAGTTTGTTCCCTTTGCAGCCGGAGGTAAATCATGTTGGTCTTTCTTGTTGCACAAGATCTGCTATGGGCCAAACAATAAGAGGTTACCTTGGAACATGCTGCTCCAAGCAAAAGGGAAACCTTCAAATTAGTAGTTCTATAGCACATCGGAAGAGGCATCATGAAATATCATTGGCATGCCAAAGTTTGAATATGAGGATTTTGGTACCTAAACAAAAAAAGCTTCCCAAAGTTAAGTGTAGTGTAGGACCGGTATCTTGGCCACGTGGATGTGCATCAGTTGGCTTGATACTTGGATTACTTGTATGCAATTTAAGCTCTGAACCTGTATATGCTGACACAGATCCTGATAATGGAAGGAGAAATGATCAAAACATGTGCGAATCAAATGTAACGTTATCGCATGGGAAGAAAGTTTACACTGACTATTCTGTAATTGGAATACCTGGGGATGGAGGATGTTTATTCCGGTCTGTTGCTCATGGGGCTTGCTTGAGGTCTGGAAAAGCTCCTCCCAGTGAAAGCCATCAGAGAGAATTGGCAGATGAATTACGCAACAAAGTTGCTGATGAGTTTATCAAAAGAAGGGAAGAGACAGAATGGTTTATTGAAGGTGATTTTGATACATATATTTCACAAATAAGGAAGCCTCATGTTTGGGGAGGTGAGCCTGAATTGTTCATTGCTTCACATGTCTTGAAGATGCCAATCACAGTTTACATGTATGATAGGGATGCTGGTGGCTTGATATCGATTGCTGAGTATGGCCAAGAATATGGCAAGGAGAATCCAATTAGAGTTCTCTACCATGGATTTGGCCATTATGATGCACTGGAGATCCCTAGAAGGAAGGGTCCTAAACCAAGGCTGTAA 963 0.4195 MLQQGRTPLLMSSNNVYGLWSQGISSSYSSSLFPLQPEVNHVGLSCCTRSAMGQTIRGYLGTCCSKQKGNLQISSSIAHRKRHHEISLACQSLNMRILVPKQKKLPKVKCSVGPVSWPRGCASVGLILGLLVCNLSSEPVYADTDPDNGRRNDQNMCESNVTLSHGKKVYTDYSVIGIPGDGGCLFRSVAHGACLRSGKAPPSESHQRELADELRNKVADEFIKRREETEWFIEGDFDTYISQIRKPHVWGGEPELFIASHVLKMPITVYMYDRDAGGLISIAEYGQEYGKENPIRVLYHGFGHYDALEIPRRKGPKPRL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272269g00003 320 Gene3D - 157 315 - -
Stsc272269g00003 320 Pfam OTU-like cysteine protease 179 305 IPR003323 -
Stsc272269g00003 320 FunFam OTU domain-containing protein 157 315 - -
Stsc272269g00003 320 SUPERFAMILY Cysteine proteinases 172 308 IPR038765 -
Stsc272269g00003 320 CDD OTU_plant_OTU4-like 172 308 - -
Stsc272269g00003 320 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 151 310 - -
Stsc272269g00003 320 ProSiteProfiles OTU domain profile. 173 311 IPR003323 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272269g00003 Stsc-Chr272269 24026 27967 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272269g00003 178 317 C2H2 Transcription Factor Family AT1G50670 27.660 3.55e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272269g00003 - - aip:107625481 577.015