Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272269g00002 ATGGATTCAAATTCGCTTCACAGTTTTCAACTTGAACACCAACAACAACAACAACAAATCAGCAGTTCTGGTTTGCTTCGTTATCGCTCTGCACCGAGTTCGCTCCTTGCGAATCTCACTCCAACTCTCACTGAATCCCAAGCCTTGCTCTCCAGATTCCTCAATAGCAATAGCAATAACAATAGTACTGAAAACGACACCGTTTCGCGTACCTTCCAAGATTCAAAAACAAACAATAATAAGGGTTGTGATTCGAAGGGTCTGAGGCGGATGAATTCGGGAGGGAATGGATATGGTGGTGTTGGATTGCCACCTCACTATCCAAGAAACACTTCTTCTTGTTCATCATCTTCTTGTTCGTCTTCAATGGATGGTTCATATGGAGTTTCTTCTTCTTCAAATCTTCTCAGGCAGAGTAGCTCCCCTGCTGGCCTTTTCTCCAACATTTCATTACAAAATGGATTTACTAATATTAAAGGTGTTGGAAACTATGGTCCTGTTAATGGCACCAATGAAGAACTTAGTCCATCAATGAACAGATTGAAGAATCAGATTAGCTTCTCATCAAGAACGGCTTCTTCCTTGGGAATGTTGTCGCAGATCTCCGAAATAGGGAATGAGGAGATTGGGGCAACTAGCCCTGAAGATGGGAGGCAGGGTGGTAGCAACGGTGACGCTTCACATTTCAGCTCCGGATTCTCCTATGGTTCTTGGAATGATGCACCACAACTCTTGGAAAATTTCACTGGCTTGAAAAGAGGGCGAAATAGCAATGAAAAGTTGTTATCTGATGTTCAGAATGGAGAGCTAGGAAATCAAGTTCATATGCTATCACATCACCTGAGTTTGCCTAAAACTTCATCAGAGATGATTGGTATGGAGAATCTGCTTCAGTTCCCAGATTCTGTTCCTTGTAAAATCAGAGCTAAGCGAGGCTGCGCTACGCATCCCCGGAGCATAGCCGAAAGGGTGCGAAGAACACGGATCAGCGAACGAATGAGGAAATTGCAAGAGCTGGTACCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCAGTTGACTACATTAAAGATCTTCAGAAACAATTCAAGGTAACAAAGAGAGAATTGATTTAA 1128 0.4309 MDSNSLHSFQLEHQQQQQQISSSGLLRYRSAPSSLLANLTPTLTESQALLSRFLNSNSNNNSTENDTVSRTFQDSKTNNNKGCDSKGLRRMNSGGNGYGGVGLPPHYPRNTSSCSSSSCSSSMDGSYGVSSSSNLLRQSSSPAGLFSNISLQNGFTNIKGVGNYGPVNGTNEELSPSMNRLKNQISFSSRTASSLGMLSQISEIGNEEIGATSPEDGRQGGSNGDASHFSSGFSYGSWNDAPQLLENFTGLKRGRNSNEKLLSDVQNGELGNQVHMLSHHLSLPKTSSEMIGMENLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQFKVTKRELI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272269g00002 375 FunFam Transcription factor bHLH130 family 314 374 - -
Stsc272269g00002 375 Gene3D - 310 373 IPR036638 GO:0046983
Stsc272269g00002 375 MobiDBLite consensus disorder prediction 55 86 - -
Stsc272269g00002 375 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 373 IPR036638 GO:0046983
Stsc272269g00002 375 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 363 IPR011598 GO:0046983
Stsc272269g00002 375 Pfam Helix-loop-helix DNA-binding domain 318 364 IPR011598 GO:0046983
Stsc272269g00002 375 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 29 369 - -
Stsc272269g00002 375 MobiDBLite consensus disorder prediction 1 23 - -
Stsc272269g00002 375 SMART finulus 319 369 IPR011598 GO:0046983
Stsc272269g00002 375 MobiDBLite consensus disorder prediction 55 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272269g00002 Stsc-Chr272269 6972 9680 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272269g00002 23 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 49.176 1.14e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc272269g00002 HLH 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272269g00002 - - aip:107625483 541.191