Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272269g00001 ATGGATTCAAATTCGCTTCACAGTTTTCAACTTGAACACCAACAACAACAACAACAAATCAGCAGTTCTGGTTTGCTTCGTTATCGCTCTGCACCGAGTTCGCTCCTTGCGAATCTCACTCCAACTCTCACTGAATCCCAAGCCTTGCTCTCCAGATTCCTCAATAGCAATAGCAATAACAATAGTACTGAAAACGACACCGTTTCGCGTACCTTCCAAGATTCAAAAACAAACAATAATAAGGGTTGTGATTCGAAGGGTCTGAGGCGGATGAATTCGGGAGGGAATGGATATGGTGGTGTTGGATTGCCACCTCACTATCCAAGAAACACTTCTTCTTGTTCATCATCTTCTTGTTCGTCTTCAATGGATGGTTCATATGGAGTTTCTTCTTCTTCAAATCTTCTCAGGCAGAGTAGCTCCCCTGCTGGCCTTTTCTCCAACATTTCATTACAAAATGGATTTACTAATATTAAAGGTGTTGGAAACTATGGTCCTGTTAATGGCACCAATGAAGAACTTAGTCCATCAATGAACAGATTGAAGAATCAGATTAGCTTCTCATCAAGAACGGCTTCTTCCTTGGGAATGTTGTCGCAGATCTCCGAAATAGGGAATGAGGAGATTGGGGCAACTAGCCCTGAAGATGGGAGGCAGGGTGGTAGCAACGGTGACGCTTCACATTTCAGCTCCGGATTCTCCTATGGTTCTTGGAATGATGCACCACAACTCTTGGAAAATTTCACTGGCTTGAAAAGAGGGCGAAATAGCAATGAAAAGTTGTTATCTGATGTTCAGAATGGAGAGCTAGGAAATCAAGTTCATATGCTATCACATCACCTGAGTTTGCCTAAAACTTCATCAGAGATGATTGGTATGGAGAATCTGCTTCAGTTCCCAGATTCTGTTCCTTGTAAAATCAGAGCTAAGCGAGGCTGCGCTACGCATCCCCGGAGCATAGCCGAAAGGGTGCGAAGAACACGGATCAGCGAACGAATGAGGAAATTGCAAGAGCTGGTACCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCAGTTGACTACATTAAAGATCTTCAGAAACAATTCAAGAATCTAAGTGAAAGAAGGGCGAATTGCAAATGTATAAGCATGCTGAGAGCAGATACAAATCAAATTGCTTAA 1176 0.4294 MDSNSLHSFQLEHQQQQQQISSSGLLRYRSAPSSLLANLTPTLTESQALLSRFLNSNSNNNSTENDTVSRTFQDSKTNNNKGCDSKGLRRMNSGGNGYGGVGLPPHYPRNTSSCSSSSCSSSMDGSYGVSSSSNLLRQSSSPAGLFSNISLQNGFTNIKGVGNYGPVNGTNEELSPSMNRLKNQISFSSRTASSLGMLSQISEIGNEEIGATSPEDGRQGGSNGDASHFSSGFSYGSWNDAPQLLENFTGLKRGRNSNEKLLSDVQNGELGNQVHMLSHHLSLPKTSSEMIGMENLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQFKNLSERRANCKCISMLRADTNQIA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272269g00001 391 Gene3D - 314 384 IPR036638 GO:0046983
Stsc272269g00001 391 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 377 IPR036638 GO:0046983
Stsc272269g00001 391 MobiDBLite consensus disorder prediction 55 86 - -
Stsc272269g00001 391 SMART finulus 319 369 IPR011598 GO:0046983
Stsc272269g00001 391 Pfam Helix-loop-helix DNA-binding domain 318 364 IPR011598 GO:0046983
Stsc272269g00001 391 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 363 IPR011598 GO:0046983
Stsc272269g00001 391 Coils Coil 353 380 - -
Stsc272269g00001 391 MobiDBLite consensus disorder prediction 1 23 - -
Stsc272269g00001 391 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 29 379 - -
Stsc272269g00001 391 FunFam Transcription factor bHLH130 family 314 382 - -
Stsc272269g00001 391 MobiDBLite consensus disorder prediction 55 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272269g00001 Stsc-Chr272269 6614 9680 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272269g00001 23 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 49.036 8.61e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc272269g00001 HLH 4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272269g00001 - - aip:107625483 581.637