Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272267g00003 ATGTACCATGGCCAAATGGATAAAAAATCTCGTGAGGAGTCTCATAGATTATTTGTCAGAGATGAACTGCAAGTTATGGTGGCTACAATTGCTTTTGGCATGGGCATAGATAAGCCTAACATAAGACAAGTGATTCATTATGGTTGCCCCAAGAGTCTTGAGTGCTACTACCAGGAAAGTGGGCGCTGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGTGACTTTTATTGTGCAGACCTAAAAACAGAAAACCAAAAAAGAGCTGTTAAGGAGTCGTTGCAAGCTGCTGAACGTTATTGTGTTCTTGCAACTTGTAGAAGAAAGTTCTTGCTTGAACACTTTGGGGAACAATATCCAGCTCATAGATGTGGAAACTGTGATAACTGCACAGTCTCAAAAAAGGAGCGCGACATGTCTAGAGAAGCATTTCTTCTAATGGCTTGCATTCATTCATGCAAGGGAAAATGGGGTCTTAATATGCCGATTGATATCTTGCGTGGGTCTCGAGCAAAGAAAATTCTTGATGCTCAGTTTGATAAGCTTCCACTTCATGGACTTGGAAAAACTTACACACCAAACTGGTGGAAAGCACTTGGGCATCAATTGATCGCTCATGGTTATTTGAAGGAAACTGTCAGTGATGTGTACAGATTTATAAGCGTCAGTTTAAAAGGAGAACAATTTTTGTCCTCTTCTACACCTGATTATCAACCTCCCTTAGTTTTGTTATTGACTGCTGAGTTGCTCGGAGAAGAGGAAAATGTAAGCACACAAGAAGAACCAAAAACTCTGGCCACTTCAGATTTAGACGGGTTTTCAGAGGTTGAACGCAAGCTCTACCAGATGCTTTTAGAAGAAAGATTAAAGCTTGCGAGAAGTGTTGGAACTGCTCCATATGCCATATGTGGTGATCAAACAATCAAGAAAATTACTCTTGCAAGACCATCTACAAAAGCAAGGCTAGCAAACATTGATGGTGTGAATCAGCACTTAGTAACAACATATGGAGATCATTTTCTTAAAGTTATCCAGCAACTGTCACAAGAATTAAACTTATCATTGGATGGGGAAGCTAATTTACTAAATAATGAAGTAAGGAAATTATCTACTGTGTCAGTAAAACAAAGTTCAAGGAAGTTGAACCCAGCAAAGTTGGAAGCATGGAAAATGTGGAATAAGGGTCTTTCTATTGAGATGATTGCTGTATGTCTTATTATTCTATTGTCATGCTTTCAGAACTTTCCAGATAGATCAGCTCCTATAAAAGAGCAAACTGTTGCTGATTATCTGTTGGAAGCTGCACAAGAAGGATTACCTATTGATTGGAGTAGATTCTGTGAGATGATAGGACTGACACAAGAGATCGAATCCGAAATTCAGGCTGCTATTTTAAAGGTTGGATCTAAAGATAAGCTGAAGCCTATAAAAAATGAACTGCCAGAAAGTGTCACTTATCCGCAAATCAAGACTTATTTGACAATGCAAAGCTGTGGTGTATTCAAAGATGACATCCAAGCTGTAGATCACCAGACTGCAAAAGAGTCAGAAATACATCAAGCCGAAATGCGATGTGAAGCCGACATTTCTGATCATAGCTCTATGGAAAAAAGTGACTTGGAAAAGGATAAAGTACCATCTGGACCTGTGGAATTCACGACCAAACGTCAGAAACTCAGTGACACAAAGGAAATAAATTCAACTGAATTGAAAGCTACGCAGAGTTCTATATTAGAGTGGCTAAAGCACCGTGATGAAGGGGCTACTTTGGTTGAAATTCAAGAGCACTTCAATGGGTCTGGCGAAGATTATGTGATTGGACTACTGAATTTATTGGAAAGTGACTTTTTAATATATAAAAAAGGTAGCATGTATAGGGTCCTGTAA 1917 0.3907 MYHGQMDKKSREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLECYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCADLKTENQKRAVKESLQAAERYCVLATCRRKFLLEHFGEQYPAHRCGNCDNCTVSKKERDMSREAFLLMACIHSCKGKWGLNMPIDILRGSRAKKILDAQFDKLPLHGLGKTYTPNWWKALGHQLIAHGYLKETVSDVYRFISVSLKGEQFLSSSTPDYQPPLVLLLTAELLGEEENVSTQEEPKTLATSDLDGFSEVERKLYQMLLEERLKLARSVGTAPYAICGDQTIKKITLARPSTKARLANIDGVNQHLVTTYGDHFLKVIQQLSQELNLSLDGEANLLNNEVRKLSTVSVKQSSRKLNPAKLEAWKMWNKGLSIEMIAVCLIILLSCFQNFPDRSAPIKEQTVADYLLEAAQEGLPIDWSRFCEMIGLTQEIESEIQAAILKVGSKDKLKPIKNELPESVTYPQIKTYLTMQSCGVFKDDIQAVDHQTAKESEIHQAEMRCEADISDHSSMEKSDLEKDKVPSGPVEFTTKRQKLSDTKEINSTELKATQSSILEWLKHRDEGATLVEIQEHFNGSGEDYVIGLLNLLESDFLIYKKGSMYRVL 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272267g00003 638 Pfam Helicase conserved C-terminal domain 2 66 IPR001650 -
Stsc272267g00003 638 SUPERFAMILY HRDC-like 283 363 IPR010997 GO:0000166|GO:0044237
Stsc272267g00003 638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 189 IPR027417 -
Stsc272267g00003 638 Gene3D HRDC domain 282 365 IPR044876 -
Stsc272267g00003 638 ProSiteProfiles HRDC domain profile. 284 364 IPR002121 GO:0003676
Stsc272267g00003 638 Pfam Helix-turn-helix domain 396 503 IPR029491 -
Stsc272267g00003 638 Pfam HRDC domain 288 354 IPR002121 GO:0003676
Stsc272267g00003 638 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 112 IPR001650 -
Stsc272267g00003 638 FunFam ATP-dependent DNA helicase 143 267 - -
Stsc272267g00003 638 SMART helicmild6 1 67 IPR001650 -
Stsc272267g00003 638 Pfam RecQ zinc-binding 92 141 IPR032284 -
Stsc272267g00003 638 SMART RQC_2 148 252 IPR018982 GO:0006260|GO:0006281|GO:0043138
Stsc272267g00003 638 Gene3D - 143 268 IPR036388 -
Stsc272267g00003 638 Gene3D - 1 142 IPR027417 -
Stsc272267g00003 638 FunFam ATP-dependent DNA helicase 280 370 - -
Stsc272267g00003 638 Pfam RQC domain 145 241 IPR018982 GO:0006260|GO:0006281|GO:0043138
Stsc272267g00003 638 PANTHER DNA HELICASE RECQ FAMILY MEMBER 1 405 - -
Stsc272267g00003 638 SMART hrdc7 284 364 IPR002121 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272267g00003 Stsc-Chr272267 12436 17454 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272267g00003 3 80 Eukaryotic Initiation Factors Gene Family AT3G13920 33.333 3.69e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272267g00003 K03654 - gmx:100797777 914.45