Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272267g00002 ATGGTTGAAATTAGCTTCAATAGTTCGGGTGTAACTCGTAAGCCTCCAGACACAGATTTGGCTGTAGCTACGCCAGGAATGTGTAACGGGTTACGAAACCATGACGGTTATGCCAACCATTGTGATTACCTAAAGGCCAATCCGCAGTGTTCTTCGGATGGATATCTTGATTACTTGAGGTTTTTCTATTGCACATGTGGAGGTGTTAGAGTTTTTGGTTATCTAGTATTGGGCATGTGGCTCGCTGCTTTGTTTTATCTTTTAGGTAACACTGCAGCAGACTACTTTTGTCCTTCACTTGAGCATCTCTCAAGGCTCTTGAAATTGCCCCCAACTGTGGCTGGAGTCGTGCTGCTTCCACTTGGTAATGGTGCACCTGATGTGTTTTCCAGTATAGCATCTTTTGTGGGTACTGAAACAGGGGAAGTGGGTCTTAACAGTGTGTTAGGTGGTGCTCTATTTGTCACCTGTGTTGTTGTTGGAGCTGTTTCTCTGTGTGTTTCAGATAAGGAGAGTCAAGTTGATCGCAGATGCTTTATAAGGGATGTTAGTTTCTTTCTAATCACTCTTGTCTCGCTGCTAGTGATTTTGGTTGTGGGTAAGGTGAGCGTTGGAGCAGCCATTGCTTTTGTGTCAATATATGTTGTTTATGCATTCGTTGTTGCTGCCAATGAGATATTACGTAAACATGCACGGAGTTTGAAATTGGATGCTGTCACGCCTTTGCTTCCTGTCCAGGGAAGCATCTTCTCTATGGGCTCTGAAGAGGATACTTCTGTCTATAGCCCTTTTCTTGACTTAGACACTGAGAGTGATCCACCCCGGTTACCTCCTTCCTTGCCTCAATGGATGTGGTCTTCAAACGTGGCAATATATTCAAACCAGGCCAACAAAATTCATATGTTAGATGATGAAAGGCCTCCTTGGGGTTGGAGTGATCAGCCCACCGAAAACAATAGGTCGTTCTCTGTTTCTAAGCTTTTTTTACTCCTGGAGGTACCCTTGGCAATTCCTAGACAGCTTACAATTCCAATGGTCAATGATGAAGTCTGGCATAGGCCATATGCTGTGGCCAGTGCTACATTGGCTCCCATTCTCCTAGCCTTCTTGTGGAGCACGCAAGATAGTGTGGGTTCTTTGGGTATAATACTTTCTTATTGTGTTAGTGTTGCACTTGGATGCACCCTTGGTATTCTTGCATATAAATATACAATGCGTGATCATCCACCACGTAGGTATCTACTTCCTTGGGTTCTGGGAGGATTCTTCATGAGCATAGTGTGGTTCTACATTATCGCAAACGAGCTTGTGGCTCTATTGGTAGATTTGGTGTAA 1335 0.4412 MVEISFNSSGVTRKPPDTDLAVATPGMCNGLRNHDGYANHCDYLKANPQCSSDGYLDYLRFFYCTCGGVRVFGYLVLGMWLAALFYLLGNTAADYFCPSLEHLSRLLKLPPTVAGVVLLPLGNGAPDVFSSIASFVGTETGEVGLNSVLGGALFVTCVVVGAVSLCVSDKESQVDRRCFIRDVSFFLITLVSLLVILVVGKVSVGAAIAFVSIYVVYAFVVAANEILRKHARSLKLDAVTPLLPVQGSIFSMGSEEDTSVYSPFLDLDTESDPPRLPPSLPQWMWSSNVAIYSNQANKIHMLDDERPPWGWSDQPTENNRSFSVSKLFLLLEVPLAIPRQLTIPMVNDEVWHRPYAVASATLAPILLAFLWSTQDSVGSLGIILSYCVSVALGCTLGILAYKYTMRDHPPRRYLLPWVLGGFFMSIVWFYIIANELVALLVDLV 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272267g00002 444 Pfam Sodium/calcium exchanger protein 79 221 IPR004837 GO:0016020|GO:0055085
Stsc272267g00002 444 Gene3D - 109 245 IPR044880 -
Stsc272267g00002 444 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 26 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272267g00002 Stsc-Chr272267 3833 5167 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272267g00002 29 443 Antiporters AT5G17860 35.904 5.23e-76 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272267g00002 K13754 - gmx:100796101 697.197