Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272264g00004 ATGGACGACGACGACGAGATCCAGTCGCATCCGTCGCCGGCGAGCGGATCCCCGGCGTCGTCGCCGAGGGAGAACGGCCGGATAACGGTAACGGTGGCGGCGCCGGCGCCGCAGCAGACACCGCCTCCGGCACCGAATACCCTGGCATTAGCACTTCCGGTTCAGCAGCAGCCTCCGAGGGGAAACGGTGGCGGAGGCGGCGGCGGAGGAGGGAGGGAGGATTGCTGGAGCGAGGGCGCTACGGCGGTGCTTATTGACGCGTGGGGAGAGAGGTATCTTGAACTGAGCAGGGGGAACCTGAAGCAGAAACACTGGAAGGAGGTGGCGGAGATCGTGAGCGCAAGAGAGGACTACGGCAAGACACCGAAGACCGACATCCAGTGCAAGAACCGGATCGACACCGTCAAGAAGAAGTACAAGCTGGAGAAGGCCAAGATCGCCTCCGGCGGAGTACCAAGCAAGTGGCCTTTCTACGATCGCCTTGACCAGCTGATCGGTCCCACTGCCAAGATCCCCGCCGCCGGTAACACACCCTCCCCGGCCACGCAGAAGGTTCCGCTTGGGATTCCGGTTGGGATCCGCAGCAGCGGTAATAACAATAATCAGTTCCAAAGTCTAAAGAATCAAAATCAGAACCAGAACAAGCAGGTGAAGAACCAGAAGCCCGCGCTCCGGAGGCGTCATCCTTCTCATCCGGAGTCCGATTCCTCGGATAGAGACCCGCCGTCTCCGGTGTCCAGTGACAGTTTCCCCCCGGAGAATTATGAGCGGAAGAGGCCGAGGATGATGCAGCAGAGAGAGATGGAGATGAACCCAAACGCGCCCAAGGGAAGGGAAGGGGGACGAGTGGCGAAGGGGAAGGGGAAGGGGAAGAGTTGGGGTGTTGCGGTGAGGGAATTGACGCAGGCGATTCTCAAGTTTGGGGAGGCTTACGAGCAAGCGGAGAGTTCGAAGCTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTTGCCAAGGACCTAGAGCTGCAGCGGATGCAGTTCTTCATGAAGACACAGTTGGAGATCTCGCAGCTTAAGCTTGGTAGAAAAGGTACCAACAATAATGCAGGGAATCACCATAGCAGCAACACCAACAACCACCATAACAATAATAGTGACAGTGAGTGA 1155 0.5818 MDDDDEIQSHPSPASGSPASSPRENGRITVTVAAPAPQQTPPPAPNTLALALPVQQQPPRGNGGGGGGGGGREDCWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVSAREDYGKTPKTDIQCKNRIDTVKKKYKLEKAKIASGGVPSKWPFYDRLDQLIGPTAKIPAAGNTPSPATQKVPLGIPVGIRSSGNNNNQFQSLKNQNQNQNKQVKNQKPALRRRHPSHPESDSSDRDPPSPVSSDSFPPENYERKRPRMMQQREMEMNPNAPKGREGGRVAKGKGKGKSWGVAVRELTQAILKFGEAYEQAESSKLQQVVEMEKQRMKFAKDLELQRMQFFMKTQLEISQLKLGRKGTNNNAGNHHSSNTNNHHNNNSDSE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272264g00004 384 MobiDBLite consensus disorder prediction 169 292 - -
Stsc272264g00004 384 FunFam trihelix transcription factor ASIL2 76 141 - -
Stsc272264g00004 384 Gene3D - 76 141 - -
Stsc272264g00004 384 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 37 356 IPR044823 -
Stsc272264g00004 384 MobiDBLite consensus disorder prediction 1 75 - -
Stsc272264g00004 384 Coils Coil 200 227 - -
Stsc272264g00004 384 MobiDBLite consensus disorder prediction 10 35 - -
Stsc272264g00004 384 Pfam Myb/SANT-like DNA-binding domain 73 164 IPR044822 -
Stsc272264g00004 384 MobiDBLite consensus disorder prediction 355 384 - -
Stsc272264g00004 384 MobiDBLite consensus disorder prediction 193 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272264g00004 Stsc-Chr272264 25434 27225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272264g00004 1 370 Trihelix Transcription Factor Family AT3G14180 46.889 2.12e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc272264g00004 Myb_DNA-bind_4 6e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272264g00004 - - adu:107464875 504.597