Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272264g00002 ATGGCTGGTGAAGGAGACAAAAGAAATGACTTCTATGCGGTTCTGGGATTGAACAAAGAGTGCACTGATTCAGAGCTAAGGAATGCATATAAGAAACTAGCACTGAAATGGCATCCTGATCGTTGTTCAGCTTCGGGGAATTCGAAGTTCGTGGAAGAATCTAAGAAGAAATTTCAAGCAATCCAGCAAGCCTATTCTGTTTTATCTGACGCCAACAAAAGGCTAATGTACGACGTAGGAGTCTACGACAGTGATGACGACGAAAACGGCATGGGGGACTTCTTGAACGAAATGGTAACAATGATGAGCCAAACAAAATCAAATGAAAATGGAGAGGAGAGTTTTGAAGAGCTGCAACAGCTATTTGAAGATATGTTTCAAGAAGATATTGGATCAGATAGAAGCACCACTTTTACTGCTGCCGGCTGCTCCTCTTCCTCGGCACGCATGGCTTATAGCGGAAATTCCAACTCGAATAAGCGCAATTCAGCTGAGATGAATTTTTTGAAGGCAGAGAATTCCTTTGACTTTGATACCAGTTACCAGAGCTTCTGCTTAGGGACAGGTGAAGCACCTCCAAGATGTAAAGAGGGAAAAGCGAAAAACTCTTCGCGGCGGAGGAGGTAG 627 0.437 MAGEGDKRNDFYAVLGLNKECTDSELRNAYKKLALKWHPDRCSASGNSKFVEESKKKFQAIQQAYSVLSDANKRLMYDVGVYDSDDDENGMGDFLNEMVTMMSQTKSNENGEESFEELQQLFEDMFQEDIGSDRSTTFTAAGCSSSSARMAYSGNSNSNKRNSAEMNFLKAENSFDFDTSYQSFCLGTGEAPPRCKEGKAKNSSRRRR 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272264g00002 208 CDD DnaJ 10 70 IPR001623 -
Stsc272264g00002 208 Gene3D DnaJ domain 7 138 IPR036869 -
Stsc272264g00002 208 PRINTS DnaJ domain signature 53 73 IPR001623 -
Stsc272264g00002 208 PRINTS DnaJ domain signature 73 92 IPR001623 -
Stsc272264g00002 208 PRINTS DnaJ domain signature 30 45 IPR001623 -
Stsc272264g00002 208 PRINTS DnaJ domain signature 12 30 IPR001623 -
Stsc272264g00002 208 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Stsc272264g00002 208 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Stsc272264g00002 208 Pfam DnaJ domain 10 78 IPR001623 -
Stsc272264g00002 208 SUPERFAMILY Chaperone J-domain 8 93 IPR036869 -
Stsc272264g00002 208 MobiDBLite consensus disorder prediction 186 208 - -
Stsc272264g00002 208 PANTHER PUTATIVE, EXPRESSED-RELATED 4 177 - -
Stsc272264g00002 208 SMART dnaj_3 9 73 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272264g00002 Stsc-Chr272264 9625 13326 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272264g00002 11 78 C2H2 Transcription Factor Family AT1G74250 43.478 6.58e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272264g00002 - - lja:Lj3g3v2576120.1 329.331