Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272264g00001 ATGGCTGGTGAAGGAGACAAAAGAAATGACTTCTATGCGGTTCTGGGATTGAACAAAGAGTGCACTGATTCAGAGCTAAGGAATGCATATAAGAAACTAGCACTGAAATGGCATCCTGATCGTTGTTCAGCTTCGGGGAATTCGAAGTTCGTGGAAGAATCTAAGAAGAAATTTCAAGCAATCCAGCAAGCCTATTCTGTTTTATCTGACGCCAACAAAAGGCTAATGTACGACGTAGGAGTCTACGACAGTGATGACGACGAAAACGGCATGGGGGACTTCTTGAACGAAATGGTAACAATGATGAGCCAAACAAAATCAAATCAGGAAAATGGAGAGGAGAGTTTTGAAGAGCTGCAACAGCTATTTGAAGATATGTTTCAAGAAGATATTGGATCAGATAGAAGCACCACTTTTACTGCTGCCGGCTGCTCCTCTTCCTCGGCACGCATGGCTTATAGCGGAAATTCCAACTCGAATAAGCGCAATTCAGCTGAGATGAATTTTTTGAAGGCAGAGAATTCCTTTGACTTTGATACCAGTTACCAGAGCTTCTGCTTAGGGGCTGGTCATGTTAATTATCATTACTACCAATGA 597 0.4238 MAGEGDKRNDFYAVLGLNKECTDSELRNAYKKLALKWHPDRCSASGNSKFVEESKKKFQAIQQAYSVLSDANKRLMYDVGVYDSDDDENGMGDFLNEMVTMMSQTKSNQENGEESFEELQQLFEDMFQEDIGSDRSTTFTAAGCSSSSARMAYSGNSNSNKRNSAEMNFLKAENSFDFDTSYQSFCLGAGHVNYHYYQ 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272264g00001 198 SUPERFAMILY Chaperone J-domain 8 93 IPR036869 -
Stsc272264g00001 198 CDD DnaJ 10 70 IPR001623 -
Stsc272264g00001 198 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Stsc272264g00001 198 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Stsc272264g00001 198 Gene3D DnaJ domain 7 139 IPR036869 -
Stsc272264g00001 198 PRINTS DnaJ domain signature 30 45 IPR001623 -
Stsc272264g00001 198 PRINTS DnaJ domain signature 73 92 IPR001623 -
Stsc272264g00001 198 PRINTS DnaJ domain signature 12 30 IPR001623 -
Stsc272264g00001 198 PRINTS DnaJ domain signature 53 73 IPR001623 -
Stsc272264g00001 198 Pfam DnaJ domain 10 78 IPR001623 -
Stsc272264g00001 198 SMART dnaj_3 9 73 IPR001623 -
Stsc272264g00001 198 PANTHER PUTATIVE, EXPRESSED-RELATED 4 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272264g00001 Stsc-Chr272264 9625 13326 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272264g00001 12 78 C2H2 Transcription Factor Family AT1G74250 44.118 6.45e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272264g00001 - - lang:109338829 310.842