Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272258g00007 ATGTTTAATCAATTATTAGTACATCCATTACTTTTCATTGAAACGTGTTTCTCTTGCTTGCAGCTTATGCATGCAGTTATGCAAAGAGATAACAGCTCTGATCTAGCCTTAGCTGTTGATATTTGGAGTTTGGGTTGCACAATCATTGAAATGTTCACAGGGAAGCCTCCTTGGAGCGAATACGAAGGAGCGGCAGCTATGTTTAAGGTTATGAGGGATACACCTCCTATACCTGAACAATTGTCATCAGAGGGAAAAGATTTCCTGAGACATTGCTTCAGAAGAAATCCAGCAGAAAGACCAAATGCATTGATGTTGCTAGATCACCGATTTGTGAAGCACTTCTAA 348 0.3994 MFNQLLVHPLLFIETCFSCLQLMHAVMQRDNSSDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMRDTPPIPEQLSSEGKDFLRHCFRRNPAERPNALMLLDHRFVKHF 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272258g00007 115 Gene3D Transferase(Phosphotransferase) domain 1 16 115 - -
Stsc272258g00007 115 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 32 114 - -
Stsc272258g00007 115 Pfam Protein kinase domain 36 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272258g00007 115 SUPERFAMILY Protein kinase-like (PK-like) 37 113 IPR011009 -
Stsc272258g00007 115 ProSiteProfiles Protein kinase domain profile. 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272258g00007 Stsc-Chr272258 42016 42753 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272258g00007 21 114 MAP Kinase Kinase Kinase AT5G66850 79.787 3.11e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc272258g00007 Pkinase 1.8e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272258g00007 - - psat:127120353 170.244