Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272258g00006 ATGGCGCCAGAGCTTATGCATGCAGTTATGCAAAGAGATAACAGCTCTGATCTAGCCTTAGCTGTTGATATTTGGAGTTTGGGTTGCACAATCATTGAAATGTTCACAGGGAAGCCTCCTTGGAGCGAATACGAAGGAGCGGCAGCTATGTTTAAGGTTATGAGGGATACACCTCCTATACCTGAACAATTGTCATCAGAGGGAAAAGATTTCCTGAGACATTGCTTCAGAAGAAATCCAGCAGAAAGACCAAATGCATTGATGTTGCTAGATCACCGATTTGTGAAGCACTTCTAA 297 0.431 MAPELMHAVMQRDNSSDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMRDTPPIPEQLSSEGKDFLRHCFRRNPAERPNALMLLDHRFVKHF 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272258g00006 98 Gene3D Transferase(Phosphotransferase) domain 1 1 98 - -
Stsc272258g00006 98 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 97 - -
Stsc272258g00006 98 SUPERFAMILY Protein kinase-like (PK-like) 1 97 IPR011009 -
Stsc272258g00006 98 Pfam Protein kinase domain 1 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272258g00006 98 ProSiteProfiles Protein kinase domain profile. 1 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272258g00006 Stsc-Chr272258 42016 42906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272258g00006 1 97 MAP Kinase Kinase Kinase AT5G66850 81.443 4.38e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc272258g00006 Pkinase 4.8e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272258g00006 - - psat:127120353 177.563