Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272258g00005 ATGAACAATGACACAAGGATTGCAGCTTCTCTCTTGCGCCTTCATTTCCATGATTGTTTTGTCAATGGATGTGATGGATCTGTGCTGCTTGATTCAACGAGCACTTTTACTGGGGAGAAAAATGCACTGCCTAACAAGAATTCATTGAGAGGATTTGAGGTGATTGACACAATCAAATCAGCATTAGAGAAGGCATGTCCAGCCACTGTGTCATGTGCTGATATACTAACTCTAGCTGCAAGAGAAGCTGTTTATCTCAGTAAAGGGCCATTTTGGGTTGTCCCTCTTGGTCGTAGAGATGGCACAACAGCAAGTGAGAGTGAGGCAAATAATCTGCCATCACCCTTTGATCCACTTGAAAACATTACCAACAAGTTCGTTGCCAAAGGTCTTGAATTGAAGGATGTAGCAGTGCTCCTAGGTGCACACACATTTGGGTTTGCACAGTGCTTTACATTCAAGCCAAGGCTATTCAACTTTGGTGGATCTGGTAAAGCGGATCCAGCACTAGATGTTTCACTCCTGCAGAATCTACAAAGTCTATGTCCAAACCAAGCTAGCTCTGACACAAACTTGGCACCTTTGGATCCTGTGACAACCAATGCATTTGACAACATGTATTATAGAAACCTGTTGAACAATTCAGGGCTACTGCTATCAGACCAGGCTCTAATGGGCAACAACACCACTGCTTCATTGGTCAACACGTATAGCAAGTGGCCTCTTCTCTTCTTCAGAGACTTTGCTGTTTCTATGGAGAAAATGGGCCGCATTGGTGTCCTCACTGGACAACAGGGCCAAGTCAGGACTAGTTGTAGGGCTCTCAACTAA 831 0.444 MNNDTRIAASLLRLHFHDCFVNGCDGSVLLDSTSTFTGEKNALPNKNSLRGFEVIDTIKSALEKACPATVSCADILTLAAREAVYLSKGPFWVVPLGRRDGTTASESEANNLPSPFDPLENITNKFVAKGLELKDVAVLLGAHTFGFAQCFTFKPRLFNFGGSGKADPALDVSLLQNLQSLCPNQASSDTNLAPLDPVTTNAFDNMYYRNLLNNSGLLLSDQALMGNNTTASLVNTYSKWPLLFFRDFAVSMEKMGRIGVLTGQQGQVRTSCRALN 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272258g00005 276 PRINTS Haem peroxidase superfamily signature 88 100 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc272258g00005 276 PRINTS Haem peroxidase superfamily signature 135 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc272258g00005 276 PRINTS Haem peroxidase superfamily signature 8 22 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc272258g00005 276 PRINTS Haem peroxidase superfamily signature 70 87 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc272258g00005 276 PRINTS Haem peroxidase superfamily signature 196 211 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc272258g00005 276 ProSiteProfiles Plant heme peroxidase family profile. 1 276 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc272258g00005 276 PANTHER PEROXIDASE 72-RELATED 2 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc272258g00005 276 FunFam Peroxidase 113 255 - -
Stsc272258g00005 276 Pfam Peroxidase 2 238 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc272258g00005 276 FunFam Peroxidase 1 125 - -
Stsc272258g00005 276 SUPERFAMILY Heme-dependent peroxidases 3 276 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc272258g00005 276 CDD secretory_peroxidase 1 274 IPR033905 GO:0004601|GO:0042744
Stsc272258g00005 276 Gene3D - 2 276 - -
Stsc272258g00005 276 ProSitePatterns Peroxidases proximal heme-ligand signature. 135 145 IPR019793 -
Stsc272258g00005 276 PRINTS Plant peroxidase signature 194 209 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc272258g00005 276 PRINTS Plant peroxidase signature 69 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc272258g00005 276 PRINTS Plant peroxidase signature 88 103 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc272258g00005 276 PRINTS Plant peroxidase signature 134 146 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc272258g00005 276 PRINTS Plant peroxidase signature 50 63 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc272258g00005 276 PRINTS Plant peroxidase signature 10 30 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc272258g00005 276 PRINTS Plant peroxidase signature 250 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc272258g00005 276 PRINTS Plant peroxidase signature 210 227 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc272258g00005 276 Gene3D Peroxidase, domain 2 113 255 - -
Stsc272258g00005 276 ProSitePatterns Peroxidases active site signature. 8 19 IPR019794 GO:0004601
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272258g00005 Stsc-Chr272258 36960 39677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272258g00005 3 272 Peroxidase AT1G49570 66.300 2.19e-125 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272258g00005 K00430 - gmx:100815708 470.7