LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272258g00004	ATGGGTCTCTGCAATTCCAAACCCTATTCGAATCCCACTCATTCTTCTCGAAATTTCGATGCTCACGGAAACACTTCAACAGCTCATAGTAATGCTGGTGTCCACCCTCATTCTAGCTCCGTCAATGGCGGAAACCCTAGCGCTGACGCACCCAACGACAACGGTAAGAGATCCCCCTTCTTTCCATTCTACACTCCGAGTCCGGCGCACTACTGGTTCTCCAAGAAGTCGCCGGCGATGAGATCTCCGGCGACCTCCGACTCCACGCCCAGGCGGCTCTTCAAGCGGCCGTTCCCGCCGCCGTCTCCTGCTAAGCACATAAAGGCGCTGCTCGCCCGGCGGCACGGTTCGGTGAAGCCTAACGAAGCCACCATACCGGAAGGTAGCGAGGCCGATGAGGTGGTTGCGCTGGACAAGAATTTTGGGTTTTCGAAGCATTTCGGAAGCAAATTTGAGGTTGGAGGTGAAGTTGGGAGAGGCCATTTTGGGTACACCTGTGCTGCCAAGTTCAAAAAAGGAGAACTGAAGGGGCAGCAGGTGGCTGTAAAAGTCATCCCCAAAGCTAAGTTCTACGATGCATATGAAGACCATGATAATGTCTATATAGTAATGGAATTGTGTGAAGGAGGAGAGCTGTTAGACAGAATCCTATCAAGGGGTGGAAAATACACGGAGGAAGATGCAAAGGCTGTCTTGAGACAAATATTAAATGTTGTTGCTTTTTGCCATCTCCAGGGTGTTGTGCATCGTGATCTTAAACCCGAGAACTTTTTGTTCACATCTAAGGATGACAACTCGGAGCTAAAGGCCATAGACTTTGGGTTGTCAGATTTTGTTAAACCAGATGAAAGGCTTAATGATATTGTTGGCAGTGCATACTATGTGGCTCCTGAAGTTCTACATAGAGCTTACAGTACTGAGGCTGATATCTGGAGTATTGGAGTCATTGCATATATTTTATTATGTGGCAGCCGTCCCTTTTGGGCCCGAACTGAGTCTGGTATCTTTCGTGCTGTATTGAAAGCTGATCCAAGTTTTGATGAACCTCCTTGGCCTTCTCTGTCAGCTGAGGCAAGGAATTTTGTTAAGCGATTATTAAATAAAGATCCACGGAAAAGAATGACTGCAGCACAAGCATTGAGTCATCCATGGATTAAAAGCAACAAGGATGTAAAAATACCTCTGGATATTCTAATATTCAAGCTAATGAAGGCATATATGCGTTCCTCGTCTTTACGAAAAGCCGCTTTAAGGGCACTGTCTAAGACATTAACTGTAGACGAGCTATTTTATTTAAAGGAGCAGTTTACACTTTTGGAGCCAAACAAAAATGGAACCATTAGCCTGGAAAACATCAAAGCGGCCTTGATGAAAAATGCAACAGATGCTATGAAGGAGTCACGCATTCCTGACTTACTTGGATCACTTAATGCATTGCAATACAGAAGGATGGATTTTGACGAGTTTTGTGCAGCTACACTTAGTGTTCATCAACTTGAAGCACTTGACCGGTGGGAGCAACATGCACGGTGTGCCTACGAACTTTTTGAAAAGGACGGAAACAGGGCTATAGTCATTGAGGAACTAGCTTCGGAACTTGGCCTTGGCCCATCTGTCCCTGTTCATGCTGTTCTTCATGATTGGATTAGGCACACCGATGGCAAGTTAAGCTTCCTTGGATTTGTGAAATTGCTGCATGGCCCATCCCGGAGTCTTGTAAAAGCTCAGTAG	1731	0.461	MGLCNSKPYSNPTHSSRNFDAHGNTSTAHSNAGVHPHSSSVNGGNPSADAPNDNGKRSPFFPFYTPSPAHYWFSKKSPAMRSPATSDSTPRRLFKRPFPPPSPAKHIKALLARRHGSVKPNEATIPEGSEADEVVALDKNFGFSKHFGSKFEVGGEVGRGHFGYTCAAKFKKGELKGQQVAVKVIPKAKFYDAYEDHDNVYIVMELCEGGELLDRILSRGGKYTEEDAKAVLRQILNVVAFCHLQGVVHRDLKPENFLFTSKDDNSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYSTEADIWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEPPWPSLSAEARNFVKRLLNKDPRKRMTAAQALSHPWIKSNKDVKIPLDILIFKLMKAYMRSSSLRKAALRALSKTLTVDELFYLKEQFTLLEPNKNGTISLENIKAALMKNATDAMKESRIPDLLGSLNALQYRRMDFDEFCAATLSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLVKAQ	576

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc272258g00004	576	Gene3D	Transferase(Phosphotransferase) domain 1	209	408	-	-
	Stsc272258g00004	576	Gene3D	Phosphorylase Kinase; domain 1	149	206	-	-
	Stsc272258g00004	576	Gene3D	-	409	567	-	-
	Stsc272258g00004	576	PANTHER	SERINE/THREONINE-PROTEIN KINASE	189	551	-	-
	Stsc272258g00004	576	MobiDBLite	consensus disorder prediction	77	100	-	-
	Stsc272258g00004	576	CDD	STKc_CAMK	150	384	-	-
	Stsc272258g00004	576	SMART	serkin_6	151	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc272258g00004	576	SUPERFAMILY	EF-hand	413	567	IPR011992	-
	Stsc272258g00004	576	FunFam	CDPK-related kinase 1	421	494	-	-
	Stsc272258g00004	576	SUPERFAMILY	Protein kinase-like (PK-like)	144	407	IPR011009	-
	Stsc272258g00004	576	ProSiteProfiles	EF-hand calcium-binding domain profile.	427	462	IPR002048	GO:0005509
	Stsc272258g00004	576	ProSiteProfiles	Protein kinase domain profile.	151	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc272258g00004	576	ProSitePatterns	Protein kinases ATP-binding region signature.	157	183	IPR017441	GO:0005524
	Stsc272258g00004	576	MobiDBLite	consensus disorder prediction	1	52	-	-
	Stsc272258g00004	576	FunFam	CDPK-related kinase 1	213	400	-	-
	Stsc272258g00004	576	Pfam	Protein kinase domain	189	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc272258g00004	576	MobiDBLite	consensus disorder prediction	1	60	-	-
	Stsc272258g00004	576	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	247	259	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272258g00004	Stsc-Chr272258	29230	33557	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272258g00004	1	576	EF-hand Containing Proteins	AT3G50530	73.197	0.0	923

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Stsc272258g00004		Pkinase	2.3e-57	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272258g00004	K13412		-	jre:108983191	950.658