LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272255g00001	ATGGCTGCTGAAAAGCCCACCCTCTCCTTAGAGGAGATCAAGAACGAAACCGTTGATCTGGAACGAATTCCAGTTGAAGAAGTGTTTGAGCAACTGAAATGTACCAGGGAAGGTTTGTCCTCTGCAGAAGGAGCCAGCAGGCTTCAAATATTTGGACCAAACAAGCTAGAAGAGAAAAAGGAAAGCAAATTTCTCAAGTTTCTTGGGTTTATGTGGAATCCCCTGTCATGGGTCATGGAAGCTGCAGCTGTTATGGCTATTGCTCTTGCAAATGGTGAAGGCAAGCCCCCGGATTGGCAAGATTTTGTTGGTATTGTTTGCTTGTTGGTCATCAACTCCACCATCAGTTTCATTGAAGAAAACAATGCCGGAAATGCTGCTGCAGCACTTATGGCTGGTCTTGCTCCTAAAACTAAGGTTCTTAGAGATGGCAAGTGGAATGAAGAAGAGGCTGCAATTCTAGTCCCTGGAGATGTCATAAGCATCAAACTCGGAGACATTGTTCCGGCCGATGCTCGTCTTCTAGAAGGTGATCCATTAAAGATTGATCAGTCAGCTCTCACCGGAGAGTCTCTTCCGGTGACGAAGAACCCTGGGGATGAAGTCTTCTCAGGCTCAACTTGCAAGCAAGGTGAGATTGAAGCAGTTGTGATTGCAACCGGAGTCCACACATTCTTTGGAAAGGCTGCTCACCTTGTTGACAGCACCAACCAAGTTGGACACTTCCAGAAGTACAGAGATGGAATTGACAATCTTCTTGTTCTCTTGATTGGTGGAATCCCCATTGCCATGCCTACTGTGTTGTCTGTGACAATGGCCATTGGATCTCACAGGCTTTCCCAACAAGGCGCCATCACGAAGCGAATGACTGCCATTGAAGAAATGGCTGGAATGGATGTGCTTTGCAGTGACAAGACAGGAACACTCACACTTAACAAACTCAGTGTTGACAAGAACTTGATTGAGGTCTTTGCTAAGGGTGTGGACAAGGATCACGTGATCCTTCTCGCCGCGAGAGCTTCCAGGATTGAAAACCAGGATGCCATTGATGCTGCTATTGTTGGAATGCTTGCTGACCCTAAAGAGGCAAGAGCTGGAATCAGAGAGATCATGAACTTGTGTAATATGAGGGAGGATGCTAAGAAGAAGGTCCATGCCATTATTGATAAGTTCGCCGAAAGAGGCCTTCGTTCGCTTGCTGTTGCTAGACAGGAAGTTCCTGAGAAAAGCAAAGAAAGCCCTGGAGCTCCATGGCAGTTTGTTGGTTTGTTGTCACTATTTGATCCCCCAAGGCATGACAGTGCCGAAACCATTCGCCAGGCTCTAAATCTCGGTGTAAATGTCAAGATGATTACAGGTGATCAACTCGCCATTGCTAAGGAGACAGGCCGAAGACTTGGAATGGGAACAAATATGTACCCTTCTGCTACACTTCTTGGCCAACACAAAGATGAAAGTATCGCCGCACTTCCCGTCGAAGAGTTGATTGAGAAAGCAGATGGATTTGCTGGAGTATTTCCAGAGCACAAATATGAGATTGTGAAGAAGCTGCAAGAGAGGAAGCACATTTGTGGTATGACTGGAGATGGTGTGAACGATGCTCCTGCTTTGAAGAAGGCTGATATTGGAATCGCTGTTGCGGACGCCACTGATGCTGCAAGAAGTGCTTCTGATATTGTCTTGACTGAACCCGGATTGAGTGTTATTATTAGTGCTGTCTTAACTAGCAGAGCTATTTTCCAAAGAATGAAGAACTACACGATATATGCAGTGTCTATCACCATCCGTATAGTGTTCGGCTTCATGTTTATCGCGTTGATCTGGAAATTCGACTTCTCTCCTTTCATGGTTCTGATCATTGCCATTCTAAATGATGGGACAATCATGACTATTTCAAAGGACAGGGTTAAGCCATCTCCCTTGCCTGATAGCTGGAAGCTGAAGGAAATTTTCGCTACCGGAATTGTTCTTGGAGGTTACCTGGCTCTCATGACTGTTATTTTCTTCTGGGCAATGAAAGAAACTACATTCTTCCCTGACAAATTTGGAGTTAGACCTTTGGATAAAAGCCCTGATGAAATGACTGCTGCATTGTACCTACAAGTTAGTATTGTCAGCCAGGCTCTGATTTTCGTCACGCGTTCGCGCAGCTGGTCTTATGTGGAACGCCCTGGATTGCTTTTGATGAGTGCTTTCCTTGTTGCTCAGCTGGTTGCTACATTGATAGCAGTGTATGCTAACTGGGGCTTTGCAAGGATCAAAGGAATTGGTTGGGGTTGGGCAGGAGTCATCTGGCTCTACAGTGTTGTCTTCTATGTTCCTCTTGACTTCATGAAATTTGCAATTCGCTACATCTTAAGTGGCAAAGCTTGGGTCAATCTGCTTGAAAACAAGACTGCCTTCACTACCAAGAAAGACTATGGAAAGGAGGAGAGGGAAGCTCAATGGGCTCTTGCTCAAAGGACCCTTCATGGACTCCAACCACCAGAGACTTCTAACATTTTCAATGAGAAGAACAGCTACAGAGAATTGTCTGAGATTGCTGAACAAGCTAAGAGAAGAGCTGAAGTTGCAAGGCTTCGCGAGCTTCACACGCTTAAGGGACACGTCGAATCCGTGGTGAAGCTGAAAGGTTTGGACATTGACACAATCCAGCAGCACTACACCGTGTAA	2673	0.4572	MAAEKPTLSLEEIKNETVDLERIPVEEVFEQLKCTREGLSSAEGASRLQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAVMAIALANGEGKPPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWNEEEAAILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVDKDHVILLAARASRIENQDAIDAAIVGMLADPKEARAGIREIMNLCNMREDAKKKVHAIIDKFAERGLRSLAVARQEVPEKSKESPGAPWQFVGLLSLFDPPRHDSAETIRQALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSATLLGQHKDESIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGGYLALMTVIFFWAMKETTFFPDKFGVRPLDKSPDEMTAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLMSAFLVAQLVATLIAVYANWGFARIKGIGWGWAGVIWLYSVVFYVPLDFMKFAIRYILSGKAWVNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPETSNIFNEKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV	890

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc272255g00001	890	PRINTS	P-type cation-transporting ATPase superfamily signature	171	185	-	-
Stsc272255g00001	890	PRINTS	P-type cation-transporting ATPase superfamily signature	527	546	-	-
Stsc272255g00001	890	PRINTS	P-type cation-transporting ATPase superfamily signature	444	454	-	-
Stsc272255g00001	890	PRINTS	P-type cation-transporting ATPase superfamily signature	550	562	-	-
Stsc272255g00001	890	PRINTS	P-type cation-transporting ATPase superfamily signature	422	433	-	-
Stsc272255g00001	890	PRINTS	P-type cation-transporting ATPase superfamily signature	302	316	-	-
Stsc272255g00001	890	SMART	Cation_ATPase_N_a_2	19	91	IPR004014	-
Stsc272255g00001	890	FunFam	Plasma membrane ATPase	136	220	-	-
Stsc272255g00001	890	Coils	Coil	841	861	-	-
Stsc272255g00001	890	Pfam	Cation transporter/ATPase, N-terminus	23	85	IPR004014	-
Stsc272255g00001	890	Gene3D	-	369	423	IPR023299	GO:0000166
Stsc272255g00001	890	Gene3D	-	316	368	IPR023299	GO:0000166
Stsc272255g00001	890	NCBIfam	HAD-IC family P-type ATPase	249	475	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Stsc272255g00001	890	NCBIfam	HAD-IC family P-type ATPase	502	616	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Stsc272255g00001	890	NCBIfam	HAD-IC family P-type ATPase	105	227	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Stsc272255g00001	890	Gene3D	-	191	315	-	-
Stsc272255g00001	890	SUPERFAMILY	Calcium ATPase, transmembrane domain M	19	786	IPR023298	-
Stsc272255g00001	890	SUPERFAMILY	Calcium ATPase, transduction domain A	136	233	IPR008250	-
Stsc272255g00001	890	Pfam	E1-E2 ATPase	135	243	-	-
Stsc272255g00001	890	PRINTS	H+-transporting ATPase (proton pump) signature	558	583	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Stsc272255g00001	890	PRINTS	H+-transporting ATPase (proton pump) signature	699	720	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Stsc272255g00001	890	PRINTS	H+-transporting ATPase (proton pump) signature	499	515	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Stsc272255g00001	890	PRINTS	H+-transporting ATPase (proton pump) signature	527	543	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Stsc272255g00001	890	PRINTS	H+-transporting ATPase (proton pump) signature	384	402	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Stsc272255g00001	890	Pfam	haloacid dehalogenase-like hydrolase	298	541	-	-
Stsc272255g00001	890	Gene3D	-	528	785	-	-
Stsc272255g00001	890	Gene3D	-	70	148	-	-
Stsc272255g00001	890	PANTHER	CALCIUM-TRANSPORTING ATPASE	369	822	-	-
Stsc272255g00001	890	CDD	P-type_ATPase_H	38	780	IPR006534	GO:0008553\|GO:0016020\|GO:0120029
Stsc272255g00001	890	FunFam	Plasma membrane ATPase	419	575	-	-
Stsc272255g00001	890	FunFam	ATPase 4 plasma membrane-type	512	754	-	-
Stsc272255g00001	890	FunFam	Membrane H(+)-ATPase1	367	427	-	-
Stsc272255g00001	890	SUPERFAMILY	HAD-like	298	574	IPR036412	-
Stsc272255g00001	890	ProSitePatterns	E1-E2 ATPases phosphorylation site.	304	310	IPR018303	-
Stsc272255g00001	890	Gene3D	-	424	491	IPR023214	-
Stsc272255g00001	890	Gene3D	-	839	890	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272255g00001	Stsc-Chr272255	3291	11297	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272255g00001	10	890	Primary Pumps ATPases	AT5G57350	80.127	0.0	1493

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272255g00001	K01535		-	vvi:100242786	1537.32