Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272252g00003 ATGATGATCATGGAGGTTCTTCATCATCATGGAGCTATAATAATCTGCGTGTTGTTGTTGAGTCTGTTTTCGAGATCCTCACACGGTTACAAATTCTATGTTGGTGGCAAAGATGGTTGGGTTGTGAACCCTTCTGAGAGTTACAACCAATGGGCTGGAAGGAACAGGTTCCAAGTCGGTGACACATTGGTGTTTAAGTACAAGGAGGGATCAGAGTCAGTGTTGGAAGTGAAGAAAGAAGAGTATGAGAAATGCAACAAAAAGAAGCCAATAAAGAAACTAGAGGGTGGTGAAAGCAGTGAGTTCCAATTTGATAGGTCAGGTCCATTCTACTTCATTAGTGGAGATGATGATAACTGTGACAAAGGTCAGAAGCTTATTGTTGTGGTGTTAGCTCAGAGACCACCACCACCTCCTCAAACTCCTCCTTCACCAATTCATAATCCACCTTATGTTCCAATTCCACCAAAAACACCTTCACCAACACCTCCCAAAAGTCCTTCACCAAAGGCACCATCACCACCTTATGTTACTCCACCTCCACCACAAGCTCCTTCACCTGGCCATAACAATCATCATCCCAACCCTCCATATACACCAATTGTACCACCAAAAACACCTTCACCTCCTTATGTTACTCCAAATCCACCACAGGCACCTTCACCTGGCCATAACAATCATGTTCCACCATCACCACCATATGTTACTCCATCTCCACCACAATCTGCACCATCCCCTGGCCATAACACTCCAATTGTTCCACCATCGCCACCATATATTACTCCATCTCCACCACAATCTGCACCTTCCCCTGGCCATAACAATCATCACCCTAACCCCCCATACACCCCAATTGTTCCACCAAAAACACCATCTCCAACTCCACCACAAGAAGCTCCTTCACCAGGCCATGGAAATTACCATCCTAACCCTCCATATGTCCCACTCCCACCAGAGGCACCATCACCAGGTGGTGGTAACACTCCAACGCCACCACAAAGTGCTCCTTCCCCTGGCCACAACAATCATCACCCTAACCCTCCATATGTTCCAACACCAAGATCATCACCTCCTTCTCCGTATGTTCCAACGCCACCACAAGGAGCTCCTTCACCTGGCAACAACAACAACAACCACCACCGTAACCCTCCAAATTCTCCACCAAAAACACCTTCCCCTGTTTCAAACCCTCCAATTTCACAACCACCATATACCTCATCGCCTTCTCCACTATCTCTCCCTCCTTACACCACACCATCTACACCACCAACAACCACCCCTTCTCAGCCACCATACACTAGTGCTGCTCCAACACCATCATCATCATCATCACAACCACCCTACAATACTTCCCCTGTTTCCCAACCTCCCACCGGAACCGGCACCGGCACCGGAACTGCACCTATAGGCTCACCACAGTACTCTCCAGCACCACCATCATCACCATTAGTCTCTCCGACACAGCCACCTTCAGTTTCAACTCCATCATCACCAGCAAACTCTCCGGTCCCTGCCACGTCATCACCACCATCACTGTCACCTTCCATTTCTCCAGCCAGCGGCGGTGCGACTCCTCTCGCCTCCCCACCTTCCCCACCCGGAGTGGCCATTCCTGCAGCGTCGCCGTCGTTGAGTCCCGGCGGATCGGGGACGCCGGCGTCGTCTTCGAACGAAACGACACCAGGAACGCCAAACGGGAAGCAGTCGTCGTCTGCATGGGCTGCAAATCCGTCAGGAGTTTGGGTTAATTCAGGCATCGCCATTTTCGTTGCTTCTGCACTAAGCACTATTATTGCCTAG 1800 0.4994 MMIMEVLHHHGAIIICVLLLSLFSRSSHGYKFYVGGKDGWVVNPSESYNQWAGRNRFQVGDTLVFKYKEGSESVLEVKKEEYEKCNKKKPIKKLEGGESSEFQFDRSGPFYFISGDDDNCDKGQKLIVVVLAQRPPPPPQTPPSPIHNPPYVPIPPKTPSPTPPKSPSPKAPSPPYVTPPPPQAPSPGHNNHHPNPPYTPIVPPKTPSPPYVTPNPPQAPSPGHNNHVPPSPPYVTPSPPQSAPSPGHNTPIVPPSPPYITPSPPQSAPSPGHNNHHPNPPYTPIVPPKTPSPTPPQEAPSPGHGNYHPNPPYVPLPPEAPSPGGGNTPTPPQSAPSPGHNNHHPNPPYVPTPRSSPPSPYVPTPPQGAPSPGNNNNNHHRNPPNSPPKTPSPVSNPPISQPPYTSSPSPLSLPPYTTPSTPPTTTPSQPPYTSAAPTPSSSSSQPPYNTSPVSQPPTGTGTGTGTAPIGSPQYSPAPPSSPLVSPTQPPSVSTPSSPANSPVPATSSPPSLSPSISPASGGATPLASPPSPPGVAIPAASPSLSPGGSGTPASSSNETTPGTPNGKQSSSAWAANPSGVWVNSGIAIFVASALSTIIA 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272252g00003 599 MobiDBLite consensus disorder prediction 472 511 - -
Stsc272252g00003 599 MobiDBLite consensus disorder prediction 435 471 - -
Stsc272252g00003 599 MobiDBLite consensus disorder prediction 133 370 - -
Stsc272252g00003 599 SUPERFAMILY Cupredoxins 29 132 IPR008972 -
Stsc272252g00003 599 Pfam Plastocyanin-like domain 40 124 IPR003245 GO:0009055
Stsc272252g00003 599 PRINTS Proline rich extensin signature 177 194 - -
Stsc272252g00003 599 PRINTS Proline rich extensin signature 138 159 - -
Stsc272252g00003 599 PRINTS Proline rich extensin signature 196 221 - -
Stsc272252g00003 599 PRINTS Proline rich extensin signature 159 175 - -
Stsc272252g00003 599 CDD OsENODL1_like 30 131 IPR041846 -
Stsc272252g00003 599 MobiDBLite consensus disorder prediction 133 576 - -
Stsc272252g00003 599 Gene3D - 29 134 IPR008972 -
Stsc272252g00003 599 MobiDBLite consensus disorder prediction 544 576 - -
Stsc272252g00003 599 FunFam Early nodulin-like protein 1 29 135 - -
Stsc272252g00003 599 MobiDBLite consensus disorder prediction 384 434 - -
Stsc272252g00003 599 MobiDBLite consensus disorder prediction 525 539 - -
Stsc272252g00003 599 PANTHER BLUE COPPER PROTEIN 31 185 IPR039391 GO:0009055
Stsc272252g00003 599 ProSiteProfiles Phytocyanin domain profile. 30 132 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272252g00003 Stsc-Chr272252 13978 16340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272252g00003 3 183 Phytocyanin Superfamily AT5G53870 46.409 2.23e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272252g00003 - - aip:107613132 345.51