Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272250g00013 ATGGGGAGAGGCAAGATTGCGATTCGAAGGATAGACAATACTACAAACAGGCAGGTGACATTCTCAAAGAGAAGGAGCGGCTTGATGAAGAAAGCTAAAGAGCTCTCTATTCTCTGCGATGCTCAAATTGGACTTATTGTTTTCTCCTGCACCGCCAAACTCTATGAATTTGCCAGCACCAGCATGAAAGCTATAACGGAGCGGTATAACAAGATAAAAGAAGACGACCATAATCAGCTAATGGATCGTGCTTCAGAAGTTAAGTTTTGGCAGCGAGAAGTGGCAACCTTGAGGCAGCAACTTCAGTACTTGCAGGAAACCCATAGGCATTTAATGGGTGAAGAACTCTCCGGTTTGTCCATCAAAGAGTTACAAGATCTGGAAAACCAACTTGAGATGGGTCTAAACAGTGTTCGCAAGAAAAAGGAACAACTTCTTACCCAAGAGATCAACCAGCTCCACCAAAAGGATAAAAACATGGAGAAGGAATATGCAGAACTAGAGAAAAAGATGAACTTCCTCCGCAGGGAGAATGAAGAACTGCGAAAGGAATGA 555 0.4324 MGRGKIAIRRIDNTTNRQVTFSKRRSGLMKKAKELSILCDAQIGLIVFSCTAKLYEFASTSMKAITERYNKIKEDDHNQLMDRASEVKFWQREVATLRQQLQYLQETHRHLMGEELSGLSIKELQDLENQLEMGLNSVRKKKEQLLTQEINQLHQKDKNMEKEYAELEKKMNFLRRENEELRKE 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272250g00013 184 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc272250g00013 184 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc272250g00013 184 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc272250g00013 184 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc272250g00013 184 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc272250g00013 184 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc272250g00013 184 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Stsc272250g00013 184 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Stsc272250g00013 184 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc272250g00013 184 Coils Coil 87 107 - -
Stsc272250g00013 184 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Stsc272250g00013 184 Coils Coil 121 184 - -
Stsc272250g00013 184 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 155 - -
Stsc272250g00013 184 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc272250g00013 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc272250g00013 184 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272250g00013 Stsc-Chr272250 39104 43809 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272250g00013 1 183 MADS-box Gene Family AT2G14210 63.043 1.71e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc272250g00013 K-box 7.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272250g00013 K09264 - tcc:18608170 254.988