Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272250g00012 ATGGGGAGAGGCAAGATTGCGATTCGAAGGATAGACAATACTACAAACAGGCAGGTGACATTCTCAAAGAGAAGGAGCGGCTTGATGAAGAAAGCTAAAGAGCTCTCTATTCTCTGCGATGCTCAAATTGGACTTATTGTTTTCTCCTGCACCGCCAAACTCTATGAATTTGCCAGCACCAGCATGAAAGCTATAACGGAGCGGTATAACAAGATAAAAGAAGACGACCATAATCAGCTAATGGATCGTGCTTCAGAAGTTAAGTTTTGGCAGCGAGAAGTGGCAACCTTGAGGCAGCAACTTCAGTACTTGCAGGAAACCCATAGGCATTTAATGGGTGAAGAACTCTCCGGTTTGTCCATCAAAGAGTTACAAGATCTGGAAAACCAACTTGAGATGGGTCTAAACAGTGTTCGCAAGAAAAAGGAACAACTTCTTACCCAAGAGATCAACCAGCTCCACCAAAAGGATAAAAACATGGAGAAGGAATATGCAGAACTAGAGAAAAAGATGAACTTCCTCCGCAGGGAGAATGAAGAACTGCGAAAGGTTGTTGAATCGTCGTCACCGTTGCTGCGGCGTAGGAATGAAGAAAATAATGCAACATCATCAATGAATCCGCTATGCACTATAAGCTATGGGTATGCAGCTCCTCCTCCTGCATCTACAAATCTACAACTAAGCCGCCATCAACAGAGTAGCGAACTCGCAGACAAAGCAATGAAACTCAAATTACAGTTTCTGTAA 747 0.4337 MGRGKIAIRRIDNTTNRQVTFSKRRSGLMKKAKELSILCDAQIGLIVFSCTAKLYEFASTSMKAITERYNKIKEDDHNQLMDRASEVKFWQREVATLRQQLQYLQETHRHLMGEELSGLSIKELQDLENQLEMGLNSVRKKKEQLLTQEINQLHQKDKNMEKEYAELEKKMNFLRRENEELRKVVESSSPLLRRRNEENNATSSMNPLCTISYGYAAPPPASTNLQLSRHQQSSELADKAMKLKLQFL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272250g00012 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc272250g00012 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc272250g00012 248 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc272250g00012 248 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Stsc272250g00012 248 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Stsc272250g00012 248 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Stsc272250g00012 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc272250g00012 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc272250g00012 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc272250g00012 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc272250g00012 248 Coils Coil 87 107 - -
Stsc272250g00012 248 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Stsc272250g00012 248 Coils Coil 121 184 - -
Stsc272250g00012 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc272250g00012 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 193 - -
Stsc272250g00012 248 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272250g00012 Stsc-Chr272250 39104 43809 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272250g00012 1 237 MADS-box Gene Family AT2G14210 53.782 4.50e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc272250g00012 K-box 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272250g00012 K09264 - mnt:21397917 276.559