Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272250g00011 ATGGCGCTGGCAGTTCGCACGCGCTTCATCGAGGTGCGTGGTTGCAGTGGGGAACAGTATAGTTTAAAATTTTACCAGCTTTCAAAGGGACGAGCCTTGGAGTACAACATATTTGTCGAAATCCGAAGAAGCCGTTTGAAAGCTATACGGTCTTTTAACTTCAACAAAAACTTCAACCCATCTCAATCTCATGAACTATCCCTGGATGGAGATGCAACTTACTCACATGCTTTTGATCAAGTCCAACTCACAGGGGAAACAGATACAGCCGTGGGATTTGGAAGAATCACAACCAAGCCTATGCGTCTCATGAAAAACAATTCAGAACAAAGATATGACTTCACCACCAACTTTTCCTTTGTGGTTATCTCAAACAGGACTTACCATGGAGAAGGTTTGGCATTCTTCATTGCAAGCCATCACCTGCCACTTCATCCTCATGATGCCATAAACGGTGGAGGGCTTGGTCTTGTGAATCCCTGCCACCCACGCCCAGATGAGTACTCTTTTGTGGCTGTGGAGTTTGACACACACTCAGATTCTTGGGACCCAAGAGGACCACAACCACATGTGGGAATAGATGTTAATTCTATGATGTCCACCAAGCATGTCAAATGGCCTGCAGATTTCTCAGAGATAGCCAATGTTTACAACTGTAGTGTTGTATACAGCGCCGGAAGCAGGCGTCTCGACGTTTACTTCACCGGAGGCTCCTTCAATGGCCCTGCACCAAAGAATCTTTCAAGCCACTTGGATCTCACTGATTACTTAAATGATCCTGTTACTCTTGGCATTTCAGCTTCAACTAGGAATTATACTGTTCAGTTTAGCCTGCTTTCATGGTCATTCACTGCAAAGTTATCAACACCGAGTGATGAAAACAGAAAAGGGAGTAAATTGAAGGAAGGACTAGAAATTGGCATAGCTTGGCTTTTGAGTTTGTTAGTGTTGGTCCTGGTCTTGGATTTCATACGCAAGAGAAGAAGAAGAAGAAAACATGAACTTGATCCTATGGATCATGAATTCCAAACTGGCACAGGACCACAGAGGATCAGCTACAACAGATTGGTGTCTGCCACGAATAACTTCGAAGAGGCGAAGAAGCTCGGAAAAGGAGGCTTTGGTGGTGTTTATAAAGGATATTTCAAAGATACAGACTCTTATGCTGCTGTAAAGAAGATATCAGCAGATTCAAGGCAAGGGATAAAGGAATATGCAGCTGAGGTGAAGATCATTAGCCAATTGAGGCACAGGAATTTGGTGAGACTTACTGGTTGGTGTCACAAGAAGAATGACTTCATCCTCATATATGAGTACATGCCCAATGGAAGCTTGGATTATTGTCTTTTCGATGGAGTATGCTTTTTGTCTTGGCAAGTAAGGTACAACATAGCTTTGGGTTTAGCATCAGCATTGCTGTATCTGCAAGAAGGGTGGGAAAAGTGTGTGCTTCATAGGGACATTAAATCAAGCAACATAATGTTGGACTCAGAGTTCAATGCTAAACTTGGGGATTTTGGATTGGCTAGGCTTGTGGATCATGAGAAAGGATCAAGGACCACAAAAACTGCAGGCACACTTGGTTACATAGCACCGGAATACATAAAAACAGGAAAAGTTGGAAAGGAATGTGATATATACAGTTTTGGGGTGGTTTTGTTGGAGATAGCAAGTGGGAAAAAGGTTATACACCACAGAGAAATGGAGGGTCGTGTGACTCAAGTTTCATTGGTAGAGTGGGTTTGGGAGCTGTATGGGTTGAGAAATATCATAGCAGCAGCAGATTCAAGTCTATGTAGGAACTTTGATGTTCAACAGATGGAATGTATTCTTGTAGTTGGGCTTTGGTGTGCCCATCCAGATTGCAAATGCAGACCCTCTATAAGGCAAGTGTTGAAGGTTCTTAACTTTGATGCTCCTTTACCCATTCTTCCACAAAGGATGCCTATTCTACCACCCTTTCTTCCTCCTCCTGCAACAAATGAGATCTTTTTCACTGCTATATCAATCCAGAATTGCTATATAAATCACTGA 2034 0.4287 MALAVRTRFIEVRGCSGEQYSLKFYQLSKGRALEYNIFVEIRRSRLKAIRSFNFNKNFNPSQSHELSLDGDATYSHAFDQVQLTGETDTAVGFGRITTKPMRLMKNNSEQRYDFTTNFSFVVISNRTYHGEGLAFFIASHHLPLHPHDAINGGGLGLVNPCHPRPDEYSFVAVEFDTHSDSWDPRGPQPHVGIDVNSMMSTKHVKWPADFSEIANVYNCSVVYSAGSRRLDVYFTGGSFNGPAPKNLSSHLDLTDYLNDPVTLGISASTRNYTVQFSLLSWSFTAKLSTPSDENRKGSKLKEGLEIGIAWLLSLLVLVLVLDFIRKRRRRRKHELDPMDHEFQTGTGPQRISYNRLVSATNNFEEAKKLGKGGFGGVYKGYFKDTDSYAAVKKISADSRQGIKEYAAEVKIISQLRHRNLVRLTGWCHKKNDFILIYEYMPNGSLDYCLFDGVCFLSWQVRYNIALGLASALLYLQEGWEKCVLHRDIKSSNIMLDSEFNAKLGDFGLARLVDHEKGSRTTKTAGTLGYIAPEYIKTGKVGKECDIYSFGVVLLEIASGKKVIHHREMEGRVTQVSLVEWVWELYGLRNIIAAADSSLCRNFDVQQMECILVVGLWCAHPDCKCRPSIRQVLKVLNFDAPLPILPQRMPILPPFLPPPATNEIFFTAISIQNCYINH 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272250g00011 677 Gene3D Transferase(Phosphotransferase) domain 1 440 650 - -
Stsc272250g00011 677 ProSiteProfiles Protein kinase domain profile. 363 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272250g00011 677 Gene3D - 50 300 - -
Stsc272250g00011 677 CDD lectin_legume_LecRK_Arcelin_ConA 51 284 IPR001220 GO:0030246
Stsc272250g00011 677 PANTHER - 93 639 - -
Stsc272250g00011 677 SUPERFAMILY Concanavalin A-like lectins/glucanases 50 294 IPR013320 -
Stsc272250g00011 677 SMART serkin_6 363 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272250g00011 677 Pfam Legume lectin domain 51 294 IPR001220 GO:0030246
Stsc272250g00011 677 Gene3D Phosphorylase Kinase; domain 1 348 439 - -
Stsc272250g00011 677 FunFam L-type lectin-domain containing receptor kinase IX.1 348 439 - -
Stsc272250g00011 677 Pfam Protein kinase domain 363 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272250g00011 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Stsc272250g00011 677 FunFam Lectin-domain containing receptor kinase A4.3 440 654 - -
Stsc272250g00011 677 ProSitePatterns Protein kinases ATP-binding region signature. 369 393 IPR017441 GO:0005524
Stsc272250g00011 677 SUPERFAMILY Protein kinase-like (PK-like) 347 657 IPR011009 -
Stsc272250g00011 677 ProSitePatterns Legume lectins beta-chain signature. 171 177 IPR019825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272250g00011 Stsc-Chr272250 30868 36705 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272250g00011 46 650 Receptor kinase-like Gene Family AT5G10530 44.588 1.43e-167 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc272250g00011 Pkinase 6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272250g00011 - - cam:101492002 620.542