Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272250g00010 ATGGCTGATTGTGGTTTCCATTGCATTATTTCATTGCTGCTTATTATTATAATAACAATCCCTGTAATTGCAAATGCTCAGAAGTTATTTTCTTTTCACTGCACCTACTTCACCCGTGGTCATTGTAATGATCTAACCCTGGAAGGTAATGCAAGTCACTCACAATCTTTGAACACCATCCAACTTGCAGGAAGCAAAATCAATGCTTCAGGATTTGGAAGAGTCACAACAAGGCAAGCACATCTTAAGGTAAATGATTCAAGATATGACTTCACCACAAACTTCTCCTTCCTTGTTTTCACAGATGACCCAACCTACACTGGAGATGGTCTGGCATTCTACATAGCAAGCCCCAAACTTCCAATCCAAGACGGAATAGACGGCGGAGGCCTCGGCCTTGCCAAGTCTTACCACCATCTCCCACATGAGTTCTCTTTTGTGGCTGTGGAGTTTGACACATATCCAAATGGATGGGATCCAGCTGGTCCATACCCTCATCTTGGACTTGATCTCAATTCTGTTGTTTCCAGCCTCACTCAGATATTGTATGTAGATTTCACACAAAGAGAACAAATTTTCAATTGTAGTATTCAGTACAACTCTGGAAACAAGCGTCTAGATGTTTTCTTCACTGCAGACTCGTCCACTGGGCCTGGAAATGGAAGGAGGCGTTTTTCGTTTCCCTTGGATCTTGATGAGTTCATAGATGATCCTGTTACTATTGGCATATCAGCTGCAGTCGCAGAAAAGAATAATACTGTCAGATATAGCTTGCTGTCATGGTCATTCACTGCAACCTTACATGTGCCGAGTAATGCTGCTTATTCCTTTCACAACAAGGCACATTTGTTGAAAGCACTAAAAATGATGATTGGTTTGTTTGTGTGTTTATTTGTTTTGGTCTTAGTCCTGCTCCTGATTTTGATATGGAGGAGAGGGAAAAGTGAGTGTGAATCTCCGTTTGATCCGATGGATCATGAATTCCAAACTGGCACTGGACCACAGAGGATCAGCTATGACAGATTGGTGTCGGCGACGGATAACTTCCAAGAGGGGAAGAAGCTTGGAAAAGGCGGTTTTGGTGGTGTTTATAAAGGATACTTCAAAGATACAGACTCTTATGCTGCTGTAAAGAAGATATCAGCAGATTCAAAGCAGGGGTTAAAGGAATATGCAGCTGAAGTGAAGATCATTAGCCAATTGAGACACAGGAATTTGGTTAGACTTACTGGTTGGTGTCACAAGAAGAATGACTTCATTCTTATATATGAGTACATGCCCAATGGAAGCTTGGATTCTTGCCTTTTTGAAGGAGTAGGCTTCTTGTCTTGGCAAGTAAGGTACAACATAGCTTTGGGATTGGCATCAGCATTGCTGTATCTGCAAGAAGGGTGGGAAAAGTGTGTGCTTCATAGGGACATTAAATCAAGCAACATAATGTTGGACTCAAATTTCAATGCTAAGCTTGGGGATTTTGGATTGGCAAGGCTTGTGGATCATGAGAAAGGTTCAAGGACCACAGTAACTGCTGGCACACTTGGTTACATAGCACCAGAATACATGAAAACAGGAAAAGTTGGAAAGGAATGTGATATATACAGTTTTGGGGTGGTTTTGTTGGAGATAGCAAGTGGGAAAAAGGTTATACACCACAGAGAAATGGAGGGTCGTGTGACTCAAGTTTCATTGGTAGAGTGGGTTTGGGAGCTGTATGGGTTGAGAAATATCATAGCAGCAGCAGATCCAAGTCTATATAGGGATTTTGATGTTCAGCAAATGGAATGTATGCTTGTTGTTGGGCTTTGGTGTGCCCATCCAGATTGTAAATGCAGGCCCTCTATAAGGCAAGTGATAAAAGTTCTTAACTTTGATGCTCCTTTATCCATTCTTCCACAAAGGATGCCTCTTTTACCCTATCTCCCCTCAACAACAAAGGAAGTCTTTTTAACTGCTGTTTCTTCATTTTAG 1968 0.4172 MADCGFHCIISLLLIIIITIPVIANAQKLFSFHCTYFTRGHCNDLTLEGNASHSQSLNTIQLAGSKINASGFGRVTTRQAHLKVNDSRYDFTTNFSFLVFTDDPTYTGDGLAFYIASPKLPIQDGIDGGGLGLAKSYHHLPHEFSFVAVEFDTYPNGWDPAGPYPHLGLDLNSVVSSLTQILYVDFTQREQIFNCSIQYNSGNKRLDVFFTADSSTGPGNGRRRFSFPLDLDEFIDDPVTIGISAAVAEKNNTVRYSLLSWSFTATLHVPSNAAYSFHNKAHLLKALKMMIGLFVCLFVLVLVLLLILIWRRGKSECESPFDPMDHEFQTGTGPQRISYDRLVSATDNFQEGKKLGKGGFGGVYKGYFKDTDSYAAVKKISADSKQGLKEYAAEVKIISQLRHRNLVRLTGWCHKKNDFILIYEYMPNGSLDSCLFEGVGFLSWQVRYNIALGLASALLYLQEGWEKCVLHRDIKSSNIMLDSNFNAKLGDFGLARLVDHEKGSRTTVTAGTLGYIAPEYMKTGKVGKECDIYSFGVVLLEIASGKKVIHHREMEGRVTQVSLVEWVWELYGLRNIIAAADPSLYRDFDVQQMECMLVVGLWCAHPDCKCRPSIRQVIKVLNFDAPLSILPQRMPLLPYLPSTTKEVFLTAVSSF 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272250g00010 655 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 272 IPR013320 -
Stsc272250g00010 655 ProSitePatterns Protein kinases ATP-binding region signature. 355 379 IPR017441 GO:0005524
Stsc272250g00010 655 Gene3D Phosphorylase Kinase; domain 1 334 425 - -
Stsc272250g00010 655 ProSiteProfiles Protein kinase domain profile. 349 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272250g00010 655 FunFam Lectin-domain containing receptor kinase A4.3 426 641 - -
Stsc272250g00010 655 FunFam L-type lectin-domain containing receptor kinase IX.1 334 425 - -
Stsc272250g00010 655 CDD STKc_IRAK 363 622 - -
Stsc272250g00010 655 SMART serkin_6 349 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272250g00010 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Stsc272250g00010 655 PANTHER - 61 625 - -
Stsc272250g00010 655 Pfam Protein kinase domain 349 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272250g00010 655 ProSitePatterns Legume lectins beta-chain signature. 147 153 IPR019825 -
Stsc272250g00010 655 Pfam Legume lectin domain 31 268 IPR001220 GO:0030246
Stsc272250g00010 655 Gene3D Transferase(Phosphotransferase) domain 1 426 636 - -
Stsc272250g00010 655 Gene3D - 28 274 - -
Stsc272250g00010 655 SUPERFAMILY Protein kinase-like (PK-like) 333 640 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272250g00010 Stsc-Chr272250 28090 30057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272250g00010 90 639 Receptor kinase-like Gene Family AT5G10530 45.341 2.54e-159 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc272250g00010 Pkinase 3.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272250g00010 - - cam:101492002 588.571