Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272250g00009 ATGAGCGCTGAAGGAACCAATGAGGTTTGCCTAGCTTGGGCTGCAACAAGTGAATCCGGAGTCCTATCACCTTACAAATTCACTCGCAGGGCTCTTGGCAATGATGATGTTCACATAAAAATTACCCACTGTGGGGTTTGTTATGCTGATGTTGTTTGGACTAGGAATAAACATGGTGATTCCAAATACCCTGTAGTACCTGGACATGAGATTGCCGGGGTTGTGGAAAAAGTTGGTTCTAGTGTCCAGCGTTTCAAAGTTGGTGACCATGTTGGAGTAGGGACTTATGTCAACTCATGCAGGGATTGTGAGTATTGTAATGACAGAGAAGAAGTTTATTGTGAGAAGGGAGCAGTTTATACCTTCAATGGCGTTGATGTTGATGGAACAATTACAAAAGGAGGATATTCAAGTTACATAGTAGTCCATGAAAGGTACTGTTATCTGATACCCAAGAATTACCCATTGGCTTCAGCTGCTCCACTGCTTTGTGCTGGAATCACTGTTTACAGTCCCATGATGCGCCACAAAATGAATCAACCCGGCAAGTCTCTAGCTGTGATTGGTCTTGGTGGTCTCGGTCATATGGCAGTGAAATTTGGAAAGGCATTTGGGTTGAATGTAACAGTTCTCAGCACCAGCGCATCCAAGAAAGAAGAGGCCCTGAATCTACTTGGTGCAGATAAATTTGTTGTTTCAACTGATAAAGAGCAAATGGCGGCATTGGCTAAGTCTTTTGACTTTATAGTTGATGCGGCGTCTGGTGATCACCCGTTTGATCCTTACATGGCACTGTTGAAGATATCTGGTGCTATGGTCCTGGTTGGCTTTCCAAGTGAGGTCAAATTCAGCCCTGCAAACCTTATTCTTGGTAAGAGAACCATATCAGGGAGTGTTACTGGTGGGACAAAAGAGACCCAAGAGATGATTGACTTCTGCGCTGCAAATGGAATTCACCCAAGCATAGAAGTGGTTCCAATAGAGTATGCAAATCAAGCTCTTGAGAGAATGATAAATAGGGATGTGAAATATCGGTTTGTTATAGATATTCAAAACTCCCTAAAATAG 1068 0.4307 MSAEGTNEVCLAWAATSESGVLSPYKFTRRALGNDDVHIKITHCGVCYADVVWTRNKHGDSKYPVVPGHEIAGVVEKVGSSVQRFKVGDHVGVGTYVNSCRDCEYCNDREEVYCEKGAVYTFNGVDVDGTITKGGYSSYIVVHERYCYLIPKNYPLASAAPLLCAGITVYSPMMRHKMNQPGKSLAVIGLGGLGHMAVKFGKAFGLNVTVLSTSASKKEEALNLLGADKFVVSTDKEQMAALAKSFDFIVDAASGDHPFDPYMALLKISGAMVLVGFPSEVKFSPANLILGKRTISGSVTGGTKETQEMIDFCAANGIHPSIEVVPIEYANQALERMINRDVKYRFVIDIQNSLK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272250g00009 355 FunFam Cinnamyl alcohol dehydrogenase 165 320 - -
Stsc272250g00009 355 Gene3D - 165 320 - -
Stsc272250g00009 355 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Stsc272250g00009 355 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491
Stsc272250g00009 355 CDD CAD1 12 349 IPR047109 GO:0016616
Stsc272250g00009 355 FunFam Putative cinnamyl alcohol dehydrogenase 6 321 350 - -
Stsc272250g00009 355 PANTHER ALDEHYDE REDUCTASE 10 353 IPR047109 GO:0016616
Stsc272250g00009 355 Pfam Zinc-binding dehydrogenase 192 314 IPR013149 -
Stsc272250g00009 355 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 318 IPR036291 -
Stsc272250g00009 355 Pfam Alcohol dehydrogenase GroES-like domain 35 148 IPR013154 -
Stsc272250g00009 355 SUPERFAMILY GroES-like 14 183 IPR011032 -
Stsc272250g00009 355 Gene3D - 13 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272250g00009 Stsc-Chr272250 23683 26140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272250g00009 2 355 Monolignol Biosynthesis Gene Families AT1G72680 73.446 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272250g00009 K00083 - gmx:100807617 611.683