Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272250g00008 ATGGCGGTTTCAATTTCGCCCATCTTGTTGTTCATGTTGATCATCATTCCATATGGATCATCGTTATCATTCAACTTCACCAGCTTTGATCCCAATAACAAGGCCATAGTCTATGAGGGATCGGCATCACCAGTGTCGCCATCAATCCAGCTCACCACAAACCAGAAAGACAAGCCCATGAATGGCAGCATTGGTCGTGCCACTTACTACCAACCCATGCACCTCTGGGACAAAGCTTCAAGGAACCTCACTCACTTCACAACCCACTTCTCCTTCATCATTGATTCCCAGAACCAAACTAACTATGGAGATGGCCTCGCGTTCTTTCTTGCTCCTAACGGTTCCACACTCCCCAACGCCACCCAAGGACGCTCTTTGGGTCTCACAGTTGACAACCTTAATCAGACACTCAACTCAACCCAAAACCCCTTTGTCGCTGTGGAGTTTGATATCTTCTCAAATCGTGGATGGGATCCACCAAAAGAACATGTTGGCATTGACATCAACTCAATGAGGTCTGCTTATAATGTCACATGGCTCACTGCTGCTGACATCAAGGAAGGGAAGCTCAATGAGGCTTGGATCACTTACAATGCCACTTCACTCAATTTGAGTGTCACCGTCACTGCCTCCAACAATGGCACAACCCTCTTGCAGCAACATCTATTTGCCATAGTGGACTTGAGAACTTATTTGCCGGAATGGGTTACCTTTGGATTCTCCGCTGCCACAGGAAATTTCTTTGCTATTCATAGTGTCTATTCATGGGATTTTAGCTCAACCTTGGAAGCACAAGCTCAGCAAAACCCAGTTGGAAGTTCTCCAAATCAGAAGAAAAAGTCTAACAACACAGCACTAGCAGTTGGATTGGGAACCGGTGGAGTTGTTCTGTTTGCTATGTTGGGTTTGGTTTTGGTTGGATTGTGGAACAAATGGAATAAAGGAACCGATGATGAGGAAGATGATCAAGATTTTGAGGAGCATATGGGGGAGGATTTTGGAAGGGGAACCGGGCCCAAGAAGTATTCATATGCTGAATTAGCACATGCAGCTGATAATTTCAAAGATGAGAACAAGCTTGGTCAGGGTGGCTTTGGTGGTGTCTATAGAGGCTACCTTAAAGATATCAACTCCTATGTTGCTATCAAGAAGATATCAGAACATTCTACTCAAGGAATAAAGGAATTCGCATCCGAAGTGAAGATCATTAGCCGGCTAAGGCATCGAAATCTTGTGCAACTAATTGGTTGGTGTCCCAAAAGAAAGAAGCTCTTGCTTGTATATGAGTACATGCCTAATGGAAGCTTAGATTTTCATCTTTTCAAGGAGCAGAATTTGCTCAAGTGGACAGTGAGATACAATATAGCTCGAGGCTTGGCGTCCGCACTGCTATACTTGCAGGAAGAATCAAGGCTTGTGGATCACGCTAAAGGCGCGCAAACCACGGTGCTAGCAGGTACTCGAGGCTACATGGCTCCCGAATGCAATACCACATGGAGGGCTACTAAGAAATCAGATGTGTATAGTTTTGGAGTTGTTGCATTAGAGATAGCATGTGGAAGAAAAGCAATCAAGCATGAGGCCCCAGAAAATGAAATCAGTATTGTGGAATGGGTGTGGGGACTTTATGGAAGAGAGAAAATTCTTGAAGCTGCAGATAGAAGGCTAGATGGGGATTTTGAAGAGGAAGAAATGAAATGCTTGATGGTTGTTGGGCTATGGTGTGCACACCCAGATCACAGAAACAGGCCTTCAATGAGGCAAGCAATTCAAGTGCTTAACTTTGAAGCTCCATTACCAACTCTTCCATTGAGTTTGCCTGTCCCTACCTATGTTATTAACTCGTCTTCTGTTATAGCTCCATTCAGCATAGATAATTCTTCTAGGGATGTCCAATACAATACCATAAGTTCTAGCTCAAACTCATACACAAACTCCTCCGGTATCACCTCAACTTCTGATGATGTATCTCCCTCTAAGTCACTTCTGCACTCGCAGTAA 2001 0.4433 MAVSISPILLFMLIIIPYGSSLSFNFTSFDPNNKAIVYEGSASPVSPSIQLTTNQKDKPMNGSIGRATYYQPMHLWDKASRNLTHFTTHFSFIIDSQNQTNYGDGLAFFLAPNGSTLPNATQGRSLGLTVDNLNQTLNSTQNPFVAVEFDIFSNRGWDPPKEHVGIDINSMRSAYNVTWLTAADIKEGKLNEAWITYNATSLNLSVTVTASNNGTTLLQQHLFAIVDLRTYLPEWVTFGFSAATGNFFAIHSVYSWDFSSTLEAQAQQNPVGSSPNQKKKSNNTALAVGLGTGGVVLFAMLGLVLVGLWNKWNKGTDDEEDDQDFEEHMGEDFGRGTGPKKYSYAELAHAADNFKDENKLGQGGFGGVYRGYLKDINSYVAIKKISEHSTQGIKEFASEVKIISRLRHRNLVQLIGWCPKRKKLLLVYEYMPNGSLDFHLFKEQNLLKWTVRYNIARGLASALLYLQEESRLVDHAKGAQTTVLAGTRGYMAPECNTTWRATKKSDVYSFGVVALEIACGRKAIKHEAPENEISIVEWVWGLYGREKILEAADRRLDGDFEEEEMKCLMVVGLWCAHPDHRNRPSMRQAIQVLNFEAPLPTLPLSLPVPTYVINSSSVIAPFSIDNSSRDVQYNTISSSSNSYTNSSGITSTSDDVSPSKSLLHSQ 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272250g00008 666 MobiDBLite consensus disorder prediction 637 666 - -
Stsc272250g00008 666 ProSitePatterns Legume lectins alpha-chain signature. 232 241 IPR000985 -
Stsc272250g00008 666 Gene3D Transferase(Phosphotransferase) domain 1 431 597 - -
Stsc272250g00008 666 Gene3D Phosphorylase Kinase; domain 1 339 430 - -
Stsc272250g00008 666 SUPERFAMILY Protein kinase-like (PK-like) 338 620 IPR011009 -
Stsc272250g00008 666 PANTHER - 51 469 - -
Stsc272250g00008 666 FunFam Lectin-domain containing receptor kinase A4.3 469 613 - -
Stsc272250g00008 666 Pfam Protein kinase domain 478 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272250g00008 666 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 267 IPR013320 -
Stsc272250g00008 666 ProSiteProfiles Protein kinase domain profile. 354 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272250g00008 666 Pfam Legume lectin domain 21 269 IPR001220 GO:0030246
Stsc272250g00008 666 Pfam Protein tyrosine and serine/threonine kinase 357 469 IPR001245 GO:0004672|GO:0006468
Stsc272250g00008 666 FunFam L-type lectin-domain containing receptor kinase IX.1 20 270 - -
Stsc272250g00008 666 FunFam L-type lectin-domain containing receptor kinase IX.1 339 430 - -
Stsc272250g00008 666 CDD lectin_legume_LecRK_Arcelin_ConA 22 262 IPR001220 GO:0030246
Stsc272250g00008 666 ProSitePatterns Protein kinases ATP-binding region signature. 360 384 IPR017441 GO:0005524
Stsc272250g00008 666 Gene3D - 20 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272250g00008 Stsc-Chr272250 20768 22864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272250g00008 8 611 Receptor kinase-like Gene Family AT5G10530 42.835 3.76e-157 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc272250g00008 Lectin_legB 2.5e-73 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272250g00008 - - gmx:100817743 880.552