Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272250g00006 ATGGTTCAGTACTATTGTGAAAAGAGTTTCTTGCTTGCTTCTTTTCATGTAATGTTAGTTGCAAGTGTTGCAACAATATCACTTGCACTAGAACCACTAGCCTTCAATTATGATGAATTCACTGACAGAGGGGATACCTTGTATACTCCTGGTGATGTCTATGATGATAATGGATCCCTTCAACTCACGGAGCAGAAGAAAGATAGCTTCGGCAGAGTCATATATTACAAACATCTTCACCTTTGGGACAACACCACAGGCAAGGTTACAGATTTCACCACCCATTTCACTTTCTCCATCAACACCCCAAACAAATCCTACGATGGCGATGGCATCACCTTCTACCTAGCAGAGCCCGGTTTTCCAGTCCCTGATCCAAGAGATGGCAGTGGCATTGGTCTCCTGAGCCGTGATCAACTCAGTACTCCAAACTACACAACAGAACATCCCTTTGTGGCAGTGGAATTTGACACCCTTTCCAATGATTGGGATCCTCCTTTTGATCATGTTGGTATTGATATCAGAGCTATCAGGAGTGATTACAAAACACAATGGTTCAGTAGTAGGGATGAGAGAGGTTATGATGCTGTTATTACTTACAATTCTAGTTCCAACAATCTGAGTGTGTCTTTCACAGGGTACCAGGATAATATCACAAAAATTGTGCAGCACCTGTCTTGTGAAGTTAATCTGAGAAATGTTCTGCCAGAATGGGTTGAATTTGGATTCACTTCAGCAACGGGGTTCTACTTTGAGTATCACACCCTTAGCTCATGGTCCTTCAACACTAGTTTTGGCACTCATGAAGCAAATGACCAGAATGGAAGCAAGAAAGGCTTGGTGATAGGGCTAAGTGTTGGTGCAGGAGTTTTAATCTGTGTTTTGGTGCTAGTTTTTTTTATGGGATGGAAGTTGAGCAGAAAAAGAAGAGAGAGCTTTGATGTTGCTATGGACAGAGATTTTGAAAGAGGTACTGGACCTAGGAGGTTTTCTTATGAAGAACTTTCTAGAGCAACTAATAATTTTGCAAAGGGACATAAAATTGGAGAGGGAGGTTTTGGTGGAGTTTACAAAGGATTCTTAAGAGATTTGAACATCCATGTTGCCATTAAGAGGATATCTCAGGGATCACAACAAGGGGTGAGGGAGTATGCATCTGAAGTCAAGATTATTAGCCAACTGAGGCACAAGAATTTGGTTCAGCTCATTGGATGGTGCCACCAGAAGAATGACCTTCTGTTGATTTATGAGTTCATGGAAAATGGCAGCTTGGATTCCTATATATTCAAAGGTAAAAGCTTGTTAACATGGGAAGTAAGATATAACATTGCTAGCGGCTTGGCTTCATCTTTATTGTACTTGCATGAAGAGTGGGGACAATGTGTGCTTCATAGGGACATCAAACCCAGCAATGTTATGTTGGATTCTAATTTCAATGTGAAGCTTGGAGATTTCGGATTAGCAAGACTTATGGACCACGGGACAGAATCGAAAACGGCTAGTTTAGCCGGAACACTGGGATATCTGGCTCCTGAAGCTGCTACAAGAGGCAAGGCTAGCAAAGAGTCTGATGTGTATAGTTTTGGAGTTGTTGCATTGGAGATAGCTTGTGGAAGAAGGATCATTGAACAAAATCTAAATGCAAATCAGATCCACTTGGTGGATTGGGTTTGGGGACTGCATGGCACAGGTAGTCTTGTAGAAGCAGCGGATCCAAGATTATATGGTGTTTTTGATAAAGAAGAAATGGAGAGGCTAATGATTGTAGGACTTTGGTGCACTCTTACTGAGTACACTATGAGGCCAACGATAAGGCAAGTGGTTCTTGTGCTTAACTTTGAAGTTCCATTGCCCACTCTCCCATCAGAGCTTCATTCTTCGAACTATTTGATCCCAAGGACTAGTTCTGCTTCTGGAAATAACCAAAGCCAGCCTTCAACTTCAAGCAATAGCTCTCTCATCACAGGGTCTTCACAATCTAGCAGCACTACAACTTCAGAATCGTCTAAACTTCTAGGAACATGA 2025 0.4193 MVQYYCEKSFLLASFHVMLVASVATISLALEPLAFNYDEFTDRGDTLYTPGDVYDDNGSLQLTEQKKDSFGRVIYYKHLHLWDNTTGKVTDFTTHFTFSINTPNKSYDGDGITFYLAEPGFPVPDPRDGSGIGLLSRDQLSTPNYTTEHPFVAVEFDTLSNDWDPPFDHVGIDIRAIRSDYKTQWFSSRDERGYDAVITYNSSSNNLSVSFTGYQDNITKIVQHLSCEVNLRNVLPEWVEFGFTSATGFYFEYHTLSSWSFNTSFGTHEANDQNGSKKGLVIGLSVGAGVLICVLVLVFFMGWKLSRKRRESFDVAMDRDFERGTGPRRFSYEELSRATNNFAKGHKIGEGGFGGVYKGFLRDLNIHVAIKRISQGSQQGVREYASEVKIISQLRHKNLVQLIGWCHQKNDLLLIYEFMENGSLDSYIFKGKSLLTWEVRYNIASGLASSLLYLHEEWGQCVLHRDIKPSNVMLDSNFNVKLGDFGLARLMDHGTESKTASLAGTLGYLAPEAATRGKASKESDVYSFGVVALEIACGRRIIEQNLNANQIHLVDWVWGLHGTGSLVEAADPRLYGVFDKEEMERLMIVGLWCTLTEYTMRPTIRQVVLVLNFEVPLPTLPSELHSSNYLIPRTSSASGNNQSQPSTSSNSSLITGSSQSSSTTTSESSKLLGT 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272250g00006 674 CDD lectin_legume_LecRK_Arcelin_ConA 33 265 IPR001220 GO:0030246
Stsc272250g00006 674 PANTHER - 57 615 - -
Stsc272250g00006 674 ProSiteProfiles Protein kinase domain profile. 342 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272250g00006 674 MobiDBLite consensus disorder prediction 631 674 - -
Stsc272250g00006 674 Gene3D - 31 278 - -
Stsc272250g00006 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Stsc272250g00006 674 ProSitePatterns Protein kinases ATP-binding region signature. 348 371 IPR017441 GO:0005524
Stsc272250g00006 674 FunFam Lectin-domain containing receptor kinase A4.3 419 631 - -
Stsc272250g00006 674 FunFam L-type lectin-domain containing receptor kinase IX.1 327 418 - -
Stsc272250g00006 674 ProSitePatterns Legume lectins alpha-chain signature. 235 244 IPR000985 -
Stsc272250g00006 674 Gene3D Transferase(Phosphotransferase) domain 1 419 631 - -
Stsc272250g00006 674 Pfam Protein kinase domain 343 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272250g00006 674 Pfam Legume lectin domain 34 274 IPR001220 GO:0030246
Stsc272250g00006 674 SMART serkin_6 342 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272250g00006 674 SUPERFAMILY Protein kinase-like (PK-like) 326 621 IPR011009 -
Stsc272250g00006 674 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
Stsc272250g00006 674 ProSitePatterns Legume lectins beta-chain signature. 152 158 IPR019825 -
Stsc272250g00006 674 CDD STKc_IRAK 348 612 - -
Stsc272250g00006 674 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 267 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272250g00006 Stsc-Chr272250 16427 18451 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272250g00006 9 629 Receptor kinase-like Gene Family AT5G10530 44.094 3.70e-170 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc272250g00006 Pkinase 2.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272250g00006 - - gmx:100783420 822.387