LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272250g00005	ATGGCAGCAAAACTTCATCAGTGTTATCACAAAAGTCACTTGTATCCTCCTTTTCACGTAACATTATTCACGCTCCTTATGATATATTATCATCACCATGTAGAAGTAGAAGCAGAACCCTTATCATTCAACTACCCGGACTTCAGTAACCCGGGAAACACCTTGAACTTTTCGGGAGAGGTCTTTCCGGATAACAACGGAGTCCTCCAACTCACCAAGTTCCATACCAAAGATAGTCAGGGCAGAGTCGTCTACAGCAAGCTACTGCATCTCACAGACTTCACTACTAGTTTTTCCTTTTCCACCAACACTCCAAATAGATCCTTTTATGGTGATGGCATCACCTTCTTTCTTGCAAAGCCAGATTTCCCACTTCCTAATCCTAGAGATGGAAGCGGAATCGGCCTCATGAGTCGTGACCAAGCCGGGAACTCAACCTACACAAACCAACATCCATTTGTGGCCGTGGAATTTGATACCGCTTCCAATGACTGGGATCCTCCTTATGCCCACGTTGGTGTGGATGTTGGTTCTTTGCACAGTATTTGCACTAGACAATGGTTCCAGGTTTGGGATCAAAGAGGATATGATGTTGTTATCACTTACAAGTCTAGCTCAAACAATTTGAGTGTCACCTTCACCGGATATAAAGATAACATCACAAAAGTTGAACAACACTTGTCCTGTGATAAAGTTAATCTGAGGGAAATCTTAACGGAATGGGTTGAATTTGGTTTCACTTCAGCAACAGGATATGCACCAGGGAAGGATTTTTCATACGAGTATCATACCCTTAAATCATGGTCCTTCAACTCTAGTTTGGACTTGGAGGCACAACATCACAAGGGTAGCAAGAGAGGTCTAGTTATAGGGGTGACCATTGGTGGTGCATGTATTCTGGGGATACTAGCTTGTCTTTTCAGATGGAAACTGATGAGGAGGAGTAGGGGCAGGGAGAATGCTCATGAGGTTGCTATGGACAGAGATTTTGAACGCGGAACTGGTCCAAGGAGGTTTTCCTATCAAGAACTTTCTAGAGCAACTAGCAACTTTGCAAACGGACATAAAATTGGAGAGGGAGGTTTTGGTGGAGTTTACAGAGGATTCTTAAGAGAGTTGAACATCCATGTTGCCATCAAGAAGGTTTCTCAGGGATCTCAACAAGGTGTGAGGGAGTATGCATCTGAAGTCAAGATCATTAGTCAACTGAGGCATAAGAACTTGGTTCAACTCATTGGATGGTGTCACGAGCAGAATGATCTGTTACTGGTTTATGAGTATGTCGAAAATGGAAGCTTGGATTCTTATCTGTTCAAAGGTAAAGGCCTATTAACATGGGAAGTAAGATATAAAATTGCTAGAGGCTTGGCTTCAGCATTGTTATATTTGCATGAAGAGTGGCACCACTGTGTGCTTCATAGGGACATCAAACCCAGCAATGTTATGTTGGATTCTAATTTCAATGCGAAGCTCGGAGATTTCGGTTTAGCAAGACTAATGGACCACGGGACAAGTTCAAAAACAACAGATTTAGCAGGAACATTGGGGTATCTAGCTCCTGAAGCTGCAACCAGAGGGAAGGCTAGTAAGGAATCTGATGTATTCAGCTTTGGAGTAGTTATTTTGGAGATAGCATGTGGAAGAAAAGTGATTCAACAAAATCAAATTGAAAATCAGATATACTTGGTGGATTGGGTTTGGGAGCTGTATAGCACAGGTAATGTTCTAGAAGCAGGTGATCCAAGATTGTATGGTGTGTTTGATAAAGAAGAAATGGAGAGGTTAATGATTGTTGGCCTTTGGTGTACTCACTCTAATTACATGATGAGGCCCAAGATTAGTCAAGCTGCTCATGTGCTTAACCATGAAGCTGCATTGCCCACTCTGTCATCGCAAGAGCACGACTCTACCTTCCTCTCAAGGATTCCTGCTTTTTCTGGGAATAACCAAACACAGCCTTCTATTTCTTCAAGTAGCTCTGTCACTACTGGATCTTCACAATCAGGCAGTGCAACTTCACAACTCATTTCTCCACGGTCTAAGATATTGCATACACGCTAA	2061	0.426	MAAKLHQCYHKSHLYPPFHVTLFTLLMIYYHHHVEVEAEPLSFNYPDFSNPGNTLNFSGEVFPDNNGVLQLTKFHTKDSQGRVVYSKLLHLTDFTTSFSFSTNTPNRSFYGDGITFFLAKPDFPLPNPRDGSGIGLMSRDQAGNSTYTNQHPFVAVEFDTASNDWDPPYAHVGVDVGSLHSICTRQWFQVWDQRGYDVVITYKSSSNNLSVTFTGYKDNITKVEQHLSCDKVNLREILTEWVEFGFTSATGYAPGKDFSYEYHTLKSWSFNSSLDLEAQHHKGSKRGLVIGVTIGGACILGILACLFRWKLMRRSRGRENAHEVAMDRDFERGTGPRRFSYQELSRATSNFANGHKIGEGGFGGVYRGFLRELNIHVAIKKVSQGSQQGVREYASEVKIISQLRHKNLVQLIGWCHEQNDLLLVYEYVENGSLDSYLFKGKGLLTWEVRYKIARGLASALLYLHEEWHHCVLHRDIKPSNVMLDSNFNAKLGDFGLARLMDHGTSSKTTDLAGTLGYLAPEAATRGKASKESDVFSFGVVILEIACGRKVIQQNQIENQIYLVDWVWELYSTGNVLEAGDPRLYGVFDKEEMERLMIVGLWCTHSNYMMRPKISQAAHVLNHEAALPTLSSQEHDSTFLSRIPAFSGNNQTQPSISSSSSVTTGSSQSGSATSQLISPRSKILHTR	686

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc272250g00005	686	MobiDBLite	consensus disorder prediction	643	686	-	-
	Stsc272250g00005	686	Gene3D	Phosphorylase Kinase; domain 1	336	427	-	-
	Stsc272250g00005	686	FunFam	Lectin-domain containing receptor kinase A4.3	428	640	-	-
	Stsc272250g00005	686	FunFam	L-type lectin-domain containing receptor kinase IX.1	336	427	-	-
	Stsc272250g00005	686	CDD	lectin_legume_LecRK_Arcelin_ConA	41	274	IPR001220	GO:0030246
	Stsc272250g00005	686	Gene3D	Transferase(Phosphotransferase) domain 1	428	640	-	-
	Stsc272250g00005	686	Pfam	Legume lectin domain	41	280	IPR001220	GO:0030246
	Stsc272250g00005	686	Pfam	Protein kinase domain	353	559	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc272250g00005	686	SMART	serkin_6	351	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc272250g00005	686	ProSitePatterns	Legume lectins beta-chain signature.	154	160	IPR019825	-
	Stsc272250g00005	686	ProSitePatterns	Protein kinases ATP-binding region signature.	357	381	IPR017441	GO:0005524
	Stsc272250g00005	686	SUPERFAMILY	Concanavalin A-like lectins/glucanases	39	275	IPR013320	-
	Stsc272250g00005	686	Gene3D	-	39	294	-	-
	Stsc272250g00005	686	SUPERFAMILY	Protein kinase-like (PK-like)	335	631	IPR011009	-
	Stsc272250g00005	686	CDD	STKc_IRAK	357	621	-	-
	Stsc272250g00005	686	ProSitePatterns	Legume lectins alpha-chain signature.	238	247	IPR000985	-
	Stsc272250g00005	686	PANTHER	-	65	627	-	-
	Stsc272250g00005	686	ProSiteProfiles	Protein kinase domain profile.	351	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc272250g00005	686	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	471	483	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272250g00005	Stsc-Chr272250	13487	15547	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272250g00005	41	638	Receptor kinase-like Gene Family	AT5G10530	44.103	3.42e-162	480

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Stsc272250g00005		Pkinase	2.2e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272250g00005	-		-	cam:101491058	777.704