Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272248g00001 ATGAGTTTTCAGGACATCGAATCTGGCCGTCCCTTCGGTGGTTCGAGGCGTGGCCTCATCAATGGGAATCAAGACCCTACTCAAGCGGTGGCAGCCGGCATATTCCAGATCAACACCGCCGTCTCCACCTTCCAGAGGCTCGTCAACACCCTTGGAACCCCCAAAGACACCCCCGAGCTGCGCGAGAAGCTCCACAAGACAAGGCTGCATATTGGGCAGCTGGTGAAGGACACATCAGCCAAGCTTAAGCAAGCTAGTGATATGGATCACCAAGTTGAAGTTAATGCAAGCAAGAAGATAGCAGATGCCAAACTCGCAAAAGATTTTCAGGCTGTTCTGAAAGAATTTCAGAAAGCGCAGCGTCTTGCAGCTGAGAGAGAAACAGCGTATACTCCTTTTGTTCCTCAAGCAGTTCTTCCTTTCAGGCAGGAGGTTCTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATAATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATCGGGGAAGTTAATGAGATTTTCAAAGATCTTGCTGTGCTCGTCCATGAGCAAGGAGCCATGATTGATGACATTGGCTCCAACATTGAGAACTCTCATGCAGCAACTGCACAAGCAAAATCTCAACTAGCCAAAGCTTCAAAAACCCAAAGATCAAATTCATCTTTGACATGTTTGCTTCTGGTGATATTTGGGATTGTGCTTCTCATCGTCATCATAGTTCTGGCCGCCTAG 750 0.4707 MSFQDIESGRPFGGSRRGLINGNQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDMDHQVEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPFRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272248g00001 249 CDD SynN 24 162 IPR006011 GO:0016020
Stsc272248g00001 249 PANTHER SYNTAXIN 27 241 IPR045242 -
Stsc272248g00001 249 CDD SNARE_Qa 176 217 - -
Stsc272248g00001 249 Gene3D - 21 134 - -
Stsc272248g00001 249 SMART SynN_4 14 128 IPR006011 GO:0016020
Stsc272248g00001 249 ProSitePatterns Syntaxin / epimorphin family signature. 162 201 IPR006012 GO:0005484|GO:0006886|GO:0016020
Stsc272248g00001 249 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 156 218 IPR000727 -
Stsc272248g00001 249 Pfam Syntaxin-like protein 31 130 IPR006011 GO:0016020
Stsc272248g00001 249 SUPERFAMILY t-snare proteins 24 211 IPR010989 GO:0016020|GO:0016192
Stsc272248g00001 249 Gene3D - 151 249 - -
Stsc272248g00001 249 SMART tSNARE_6 151 218 IPR000727 -
Stsc272248g00001 249 FunFam Syntaxin-22 like 149 249 - -
Stsc272248g00001 249 Pfam SNARE domain 193 244 IPR000727 -
Stsc272248g00001 249 FunFam Syntaxin-22 like 21 134 - -
Stsc272248g00001 249 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272248g00001 Stsc-Chr272248 19051 23770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272248g00001 1 237 SNARE and Associated Proteins AT5G46860 74.806 6.15e-135 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272248g00001 - - gmx:547656 359.762