Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272243g00003 ATGCCGACCACCACCGACACACCACGGCGGCCAACCATTACCCTTCCGCCGCGCCCTAGCCTGGACACGTTCCTTTCGTCCGCAGGAATAATAAGCCCTGGTCCCATCACTCTGGTGTCCTCCTTCTTTGCCGACGACTACTCCTCCCTACTTTCACCTTCACCTTCCTTCTCTCAGCTTCTCGCCGCCGCCAATAATGACAGTAGCCCCTCGGCTCTCTTCTCTGTGCCACCTGGCTTCAGCCCCTCCGCCTTCCTCTTCTCCCCTCACCCTCAGAGTCCTTTTGGGATTTCACACCAGCAGGCATTAGCACAGGTTACAGCTCAAGCTGTGGTATCACAATCACAAGGGCCAATGCAGATTGATTATCAGATAAATGTGGCAGAAGAAGAAGCTTCCAATGATGCTTCAGATAAGAAAGTTGCAGTGGCAGTATCAGATAATGCTAACAAGAAATTCCAACAGCCTTCTGATGATGGCTATAACTGGAGAAAATATGGACAGAAGCAGGTTAAAGGGAGTGAGTTTCCAAGAAGCTATTACAAGTGTACAAATCTGAGTTGCCTTGTGAAGAAGAAGGTTGAACGTGCCTGTGATGGTCACATAACAGAAATCATCTATAAAGGCCAACATAACCATGAAAAGCCTCTGCCAAATAAGCGCAATAATAATAATAATAGCATTGATTCATCAGATAGTTTTGGGAAAAGCTTTTCTGATTGTTCATCAATGATGGATCATTGTGAGAGCTATGATTTGGGTGGTGTAGATATGAGGGAAGAAGAAGAGGGAGGAGATGATAATGTTATTGAACCTAACCCCAAGAGAAGGAGCATTGATGTTGGGGTTTCTGAGGTACATAAAACGACTGTGACAGAACCCAAAATCATTGTCCAAACAAGAAGTGAAGTTGATCTTTTGGATGATGGCTATAAGTGGCGCAAGTATGGCCAGAAAGTGGTCAAGGGTAATCCTCATCCTAGGTAA 987 0.458 MPTTTDTPRRPTITLPPRPSLDTFLSSAGIISPGPITLVSSFFADDYSSLLSPSPSFSQLLAAANNDSSPSALFSVPPGFSPSAFLFSPHPQSPFGISHQQALAQVTAQAVVSQSQGPMQIDYQINVAEEEASNDASDKKVAVAVSDNANKKFQQPSDDGYNWRKYGQKQVKGSEFPRSYYKCTNLSCLVKKKVERACDGHITEIIYKGQHNHEKPLPNKRNNNNNSIDSSDSFGKSFSDCSSMMDHCESYDLGGVDMREEEEGGDDNVIEPNPKRRSIDVGVSEVHKTTVTEPKIIVQTRSEVDLLDDGYKWRKYGQKVVKGNPHPR 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272243g00003 328 SUPERFAMILY WRKY DNA-binding domain 299 328 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272243g00003 328 MobiDBLite consensus disorder prediction 1 20 - -
Stsc272243g00003 328 ProSiteProfiles WRKY domain profile. 302 328 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272243g00003 328 MobiDBLite consensus disorder prediction 258 282 - -
Stsc272243g00003 328 Gene3D WRKY domain 294 328 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272243g00003 328 SUPERFAMILY WRKY DNA-binding domain 156 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272243g00003 328 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 92 328 IPR044810 GO:0003700
Stsc272243g00003 328 SMART WRKY_cls 157 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272243g00003 328 FunFam WRKY transcription factor 146 217 - -
Stsc272243g00003 328 MobiDBLite consensus disorder prediction 212 231 - -
Stsc272243g00003 328 MobiDBLite consensus disorder prediction 268 282 - -
Stsc272243g00003 328 Pfam WRKY DNA -binding domain 308 328 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272243g00003 328 Pfam WRKY DNA -binding domain 158 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272243g00003 328 Gene3D WRKY domain 141 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272243g00003 328 ProSiteProfiles WRKY domain profile. 158 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272243g00003 Stsc-Chr272243 2481 4756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272243g00003 10 328 WRKY Transcription Factor Family AT2G03340 41.981 3.00e-87 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc272243g00003 WRKY 2.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272243g00003 - - aip:107622739 404.831