Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272241g00006 ATGAGCAAGAAGAACAGGAAATTCAAGGATCTTCATGGAGTTCTTAGCCTTCTAGCTTTGTGCTTGTTGTTTCAGAGCTTTGGTCTATGCCGCTCTTTGAACGAAGAAGGTAGAGCTCTGTTGAAGTTGAAGGAAGGGATTGTGAGTGACCCTTTTGGAGCTTTGTCAGATTGGGTTGATGATCAAGTATCTGTTAGCCCCTGCAATTGGTTTGGTGTTGAGTGCTCTTCACATGGAACAGTTGTGGTCTTGAATTTGAAAGACCTTTGTCTTGGAGGAACTCTGACACCGGAGCTTGCGAACCTTGTTCATATAAAGTCCATCGTTTTGAGGAACAATTCCTTTTTCGGAATAGTTCCTGAATGTATTGTGCACTTGAAAGAATTGGAGGTTTTGGATTTGGGCTACAACAACTTCAGTGGACCTCTACCTGCGGATCTCGGGAGTAATATTTCGTTATCGATCCTTTTGCTGGACAACAATGAACTTCTTGGTGGTTTCTCTCCTGAAATTAACGAATTGACTATGCTTTCAGAATCTCAAGTAGATGAAAAACAATTGACTAATGCTGAAAAAAGGCTGGCTTGTACAGAAAGATACACAACACGGCATGTTGGTCAAAACAAGTTACGGAGGATACTGCAATCTAGAGAGCATGGCGATATTCATAATCGTGCAGCAGTTAATCCTCTTAGCCCTGCTCCATCCCCTCAACCAGATCCTTCTTTACCTTCCCCTCGGCTGAGTCCTGCTTCTGCTCCCTCTCGGTCAATTCCTCCTTCTCCTTCTCCATCAGCATCAGAAAAACCACAACCACAGATAAAGCCAATTTCTCCAAATAGAAATAATTCTGTTGCTCCTCCTACTGCTTCTCCAAATGGAAATAATTCTGCTTCTCCTCCTACCGGTCCAACTTCAGGCTCTAAAATACAACCTGAAACCAAATCATCAAAGAATCATCGAGTTGCTATCGTGGCTGGAGTTATCGGCGGTGCTGTGTTTCTTATTGTTTCAAGCATTGGCATATATCTCTGTAAAACCAACAAGGTAGCTACTGTAAAACCTTGGGCTACAGGATTAAGTGGACAGCTTCAAAAGGCTTTTGTCACAGGTGTGCCAAAGTTAAAGAGATCCGAGCTTGAGGCAGCATGTGAAGATTTCAGTAATGTAATTGGAACTTCGCCCATTGGTACAGTTTACAAAGGGACTTTATCTAGTGGTGTTGAAATAGCTGTAGCATCTATTACAAAGGATGACTCCAAGAATTGGTCAAAGACTTCAGAAGCACAATTTCGGAAGAAGATTGATATGCTATCGAAAATGAACCACAAGAATTTCGTAAATCTTATTGGATATTGTGAAGAAGAGGAACCTTTCACCAGAATGGTAGTTTTCGAATATGCCCCGAACGGAACACTATTTGAGCATTTACACGTAAAAGAAGCTGAGCATCTGGAATGGGGAACAAGACTTAGAGTTGCTATGGGAACGGCTTACTGCTTGCAACATATGCACCAGTTGGACCCTCCTATGGCCCATAGCAACCTTGACTCTCAAGCTATCCACCTCACCGACGATTATGCTGCCAAAGTATCAGATTTCAGTTACCTGAATGAAATAATTTCGGCTGACACAAAAGCCGGTGCTAGAAAACACACCACTGACACTACATTAACAGGTAATGTTCACAGCTTCGGTGTCATATTACTTGAATTAGTAACCGGCCAGCTTCCTTACTCGGCCAAACATGGCTCTCTTGGAGAATGGATGTTGCCCTACTTACAAGGTAACCGGCCGCTAAGAGAAATCATTGATCAGACACTATTGTCCTTCCAAGAAGAACAGCTCCAAGAAATCACTGCTTTGATTATATCTTGCATTGATCACGATCCGCAGAGAAGACCAACAATGAAAGAGGTGAGTGAGAGACTGAGAGAGATAACTAAGATAACGCCGGATCAGGCTGTTCCAAAGCTTTCGCCACTTTGGTGGGCAGAGCTTGAGATTGCTTCTAGCAATTCTATGGATGCAAGCTGA 2037 0.4286 MSKKNRKFKDLHGVLSLLALCLLFQSFGLCRSLNEEGRALLKLKEGIVSDPFGALSDWVDDQVSVSPCNWFGVECSSHGTVVVLNLKDLCLGGTLTPELANLVHIKSIVLRNNSFFGIVPECIVHLKELEVLDLGYNNFSGPLPADLGSNISLSILLLDNNELLGGFSPEINELTMLSESQVDEKQLTNAEKRLACTERYTTRHVGQNKLRRILQSREHGDIHNRAAVNPLSPAPSPQPDPSLPSPRLSPASAPSRSIPPSPSPSASEKPQPQIKPISPNRNNSVAPPTASPNGNNSASPPTGPTSGSKIQPETKSSKNHRVAIVAGVIGGAVFLIVSSIGIYLCKTNKVATVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGTSPIGTVYKGTLSSGVEIAVASITKDDSKNWSKTSEAQFRKKIDMLSKMNHKNFVNLIGYCEEEEPFTRMVVFEYAPNGTLFEHLHVKEAEHLEWGTRLRVAMGTAYCLQHMHQLDPPMAHSNLDSQAIHLTDDYAAKVSDFSYLNEIISADTKAGARKHTTDTTLTGNVHSFGVILLELVTGQLPYSAKHGSLGEWMLPYLQGNRPLREIIDQTLLSFQEEQLQEITALIISCIDHDPQRRPTMKEVSERLREITKITPDQAVPKLSPLWWAELEIASSNSMDAS 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272241g00006 678 Pfam Leucine rich repeat 104 163 IPR001611 GO:0005515
Stsc272241g00006 678 SUPERFAMILY Protein kinase-like (PK-like) 368 644 IPR011009 -
Stsc272241g00006 678 MobiDBLite consensus disorder prediction 232 269 - -
Stsc272241g00006 678 PANTHER PROTEIN MALE DISCOVERER 2 16 672 - -
Stsc272241g00006 678 FunFam Inactive receptor-like serine/threonine-protein kinase 359 467 - -
Stsc272241g00006 678 Pfam Leucine rich repeat N-terminal domain 34 76 IPR013210 -
Stsc272241g00006 678 Gene3D Ribonuclease Inhibitor 32 226 IPR032675 -
Stsc272241g00006 678 Gene3D Phosphorylase Kinase; domain 1 357 467 - -
Stsc272241g00006 678 Pfam Protein tyrosine and serine/threonine kinase 388 644 IPR001245 GO:0004672|GO:0006468
Stsc272241g00006 678 ProSiteProfiles Protein kinase domain profile. 385 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272241g00006 678 Gene3D Transferase(Phosphotransferase) domain 1 468 656 - -
Stsc272241g00006 678 SUPERFAMILY L domain-like 36 188 - -
Stsc272241g00006 678 MobiDBLite consensus disorder prediction 270 313 - -
Stsc272241g00006 678 MobiDBLite consensus disorder prediction 226 318 - -
Stsc272241g00006 678 FunFam Nuclear pore complex protein NUP107 33 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272241g00006 Stsc-Chr272241 25667 29877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272241g00006 20 644 Receptor kinase-like Gene Family AT5G16000 25.870 2.31e-44 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Stsc272241g00006 PK_Tyr_Ser-Thr 1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272241g00006 - - gmx:100784541 824.313