Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272238g00005 ATGAAGGTTTTTGTAAAGACTCTGAAGGGCACTCACTTCGAAATTGAAGTGAACCCCGATGACACGGTTACTGAAGTGAAGAAAAATATAGAAACTGTTCAAGGAGCAAATGTCTACCCTGCTGCACAGCAAATGCTTATTCACCAAGGCAAGGTTCTCAAGGATGGTACTACTTTGGAGGAAAACAAAGTGGCTGAAAATAGTTTCATTGTAATCATGCTTTCTAAGAGTAAAAGCACATCTGGTGAAGGATCTACTGCATCAACAGCACCTGCATCAAAGGCTCCGGAGACTAGTGCTACTCCTACCCCTACCCCATCTCTGTCAGTAGCACCTCAAGCTGCTCCTGCCACTGCTACACCTCCTGCACCTGTGGCTTCACCTTCGCCTTCGCCTTCGCCTGCACCTGCACCTGCACCTGCACCTTCACCTTCTCCTGCTGCAGCTCCTACATCTACAGACACTGCCGTGGCAGGGTCTGATATCTATGGTCAGGCAGCATCAAATCTGGTTGCTGGAAGCAACCTGGAGGGAACAGTTCAGCAGATTCTTGATATGGGTGGTGGGAGCTGGGATAGGGAAACAGTTATCCGTGCTCTTAGAGCTGCTTACAACAACCCTGAGAGAGCAGTTGAATATTTGTATACAGGTATCCCTGAGCAAGCTGAAGCTCCACCTGTGGCCCGAGTGCCTACAAGTGTACAACCTGCAAATTCTCCCGCTGCTGCACCTCAAGCGGCTTCACCTCAAGCAGCACAACCAGCTGCTGTTACCACTAGTGGCCCAAATGCTAATCCTTTAGACCTATTTCCGCAGGGCCTCCCCAATGTCGGTTCTGGGGCCGCTGGTGCTGGCTCTTTAGAATTTCTACGCAACAGTCAACAGTTTCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAACTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAAGCTGATTTCCTTCGTCTGATAAATGAACCTGTGGAAGGTGGTGAGGGGAACTTATTTGGGCAGCTAGCTGCTGGCATGCCACAATCAGTAACCGTCACACCTGAAGAGCGCCAAGCGATCGAGCGACTTGAAGCAATGGGCTTTGATCGTGCACTTGTGTTGGAGGTGTACTTTGCGTGCAACAAGAACGAGGAATTGGCTGCCAACTACCTCATAGATCATATGCATGAGTTTGACGAACAATAG 1242 0.4887 MKVFVKTLKGTHFEIEVNPDDTVTEVKKNIETVQGANVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKSKSTSGEGSTASTAPASKAPETSATPTPTPSLSVAPQAAPATATPPAPVASPSPSPSPAPAPAPAPSPSPAAAPTSTDTAVAGSDIYGQAASNLVAGSNLEGTVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYTGIPEQAEAPPVARVPTSVQPANSPAAAPQAASPQAAQPAAVTTSGPNANPLDLFPQGLPNVGSGAAGAGSLEFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNLFGQLAAGMPQSVTVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLIDHMHEFDEQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272238g00005 413 MobiDBLite consensus disorder prediction 232 262 - -
Stsc272238g00005 413 FunFam UV excision repair protein RAD23 1 80 - -
Stsc272238g00005 413 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Stsc272238g00005 413 Gene3D - 278 343 IPR036353 GO:0003684|GO:0006289|GO:0043161
Stsc272238g00005 413 SMART ubq_7 1 75 IPR000626 GO:0005515
Stsc272238g00005 413 FunFam UV excision repair protein RAD23 homolog 359 407 - -
Stsc272238g00005 413 Gene3D - 1 80 - -
Stsc272238g00005 413 MobiDBLite consensus disorder prediction 230 262 - -
Stsc272238g00005 413 NCBIfam UV excision repair protein Rad23 1 411 IPR004806 GO:0006289
Stsc272238g00005 413 SMART uba_6 176 216 IPR015940 -
Stsc272238g00005 413 SMART uba_6 368 405 IPR015940 -
Stsc272238g00005 413 SUPERFAMILY UBA-like 173 225 IPR009060 GO:0005515
Stsc272238g00005 413 Gene3D - 360 407 - -
Stsc272238g00005 413 CDD Ubl_Rad23 1 74 - -
Stsc272238g00005 413 MobiDBLite consensus disorder prediction 117 147 - -
Stsc272238g00005 413 SMART CBM 285 328 IPR006636 -
Stsc272238g00005 413 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Stsc272238g00005 413 SUPERFAMILY UBA-like 347 411 IPR009060 GO:0005515
Stsc272238g00005 413 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 365 406 IPR015940 -
Stsc272238g00005 413 FunFam UV excision repair protein RAD23 B 278 343 - -
Stsc272238g00005 413 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 401 - -
Stsc272238g00005 413 Pfam UBA/TS-N domain 368 403 IPR015940 -
Stsc272238g00005 413 Pfam UBA/TS-N domain 179 214 IPR015940 -
Stsc272238g00005 413 Pfam XPC-binding domain 287 342 IPR015360 GO:0003684|GO:0006289|GO:0043161
Stsc272238g00005 413 PRINTS DNA repair protein Rad23 signature 394 409 IPR004806 GO:0006289
Stsc272238g00005 413 PRINTS DNA repair protein Rad23 signature 313 335 IPR004806 GO:0006289
Stsc272238g00005 413 PRINTS DNA repair protein Rad23 signature 379 393 IPR004806 GO:0006289
Stsc272238g00005 413 PRINTS DNA repair protein Rad23 signature 362 378 IPR004806 GO:0006289
Stsc272238g00005 413 MobiDBLite consensus disorder prediction 77 155 - -
Stsc272238g00005 413 Gene3D - 169 219 - -
Stsc272238g00005 413 CDD UBA1_Rad23_plant 170 219 - -
Stsc272238g00005 413 MobiDBLite consensus disorder prediction 77 114 - -
Stsc272238g00005 413 FunFam UV excision repair protein RAD23 homolog 169 219 - -
Stsc272238g00005 413 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 174 217 IPR015940 -
Stsc272238g00005 413 SUPERFAMILY XPC-binding domain 284 349 IPR036353 GO:0003684|GO:0006289|GO:0043161
Stsc272238g00005 413 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272238g00005 Stsc-Chr272238 33710 37955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272238g00005 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 4.13e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272238g00005 K10839 - gmx:100814162 575.859