Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272233g00005 ATGGCCGATGCACATGAGACTGACAAGAACATTGAGGTTTGGAAGATCAAGAAATTGATCAAAGCTCTTGAGGCTGCCAGAGGAAATGGGACAAGTATGATTTCCCTTATCATGCCCCCACGTGATCAAATTTCTCGAGTTACCAAGATGCTTGGTGATGAATTTGGTACTGCTTCCAACATCAAGAGCAGGGTGAACAGGCAGTCTGTGCTTGGGGCTATCACCTCTGCCCAGCAGAGGCTCAAGCTCTATAACAAGGTTCCTCCAAACGGGCTTGTGCTGTATACTGGCACAATTGTGACTGAAGATGGTAAGGAAAAGAAGGTTACTATTGACTTTGAGCCTTTCAGACCTATCAATGCTTCCCTCTATCTATGTGACAACAAGTTTCATACTGAGGCTCTAAATGAGCTTTTGGAGTCTGATGACAAGTTTGGGTTCATAGTCATGGACGGCAATGGTACCCTGTTTGGGACCTTGAGTGGTAACACCAGGGAAGTGCTTCATAAATTCAGTGTCGATCTCCCGAAGAAGCATGGAAGAGGAGGGCAATCAGCTCTTCGATTTGCCCGTCTTCGTATGGAAAAACGTCATAACTATGTCAGGAAGACGGCCGAGCTTGCAACTCAGTTTTATATCAATCCAGCTACCAGCCAGCCAAATGTTTCTGGATTAATACTTGCTGGTTCAGCTGATTTCAAAACTGAGCTTAGTCAGTCTGATATGTTTGATCCTCGACTTCAAGCAAAAATTCTCAATGTTGTAGATGTTTCCTATGGTGGTGAGAATGGGTTTAATCAGGCTATCGAACTTTCATCTGAGATTCTTTCCAATGTGAAATTTATCCAGGAGAAACGCTTGATTGGAAAATACTTTGAGGAAATTAGCCAGGATACTGGGAAATATGTTTTTGGGGTTGATGATACTTTGAAAGCTTTGGAGATGGGAGCTGTTGAGACACTAATTGTGTGGGAAAATTTGGATATGAGCAGGCGGTTTGGTTGCACTCTCGAGTTTGTCACAAATAAGTCACAAGAAGGTTCACAGTTCTGCAGAGGTTTTGGTGGGATTGGTGGGATCTTGCGCTACCAGCTGGACATGAGAACATTTGATGATTTCTCTGATGATGATGCTGGAAAGGAGGTGAAAATACCTGCACCAGTAATTGAGGGGGTAGCACATGCTCCTGCTGCCCCTGCTCTTTATCCTCCACCTGTGGTATTGCATGATGCTATGCCTCAAGAGTCCTATGTACTGATCCCGGTTACTGTTCTGTATGATCTCCTACTCCCCCAAGCCAGCAAACTTGCTTGCCGCCTTAGCTCATCTGCCCTCTACACGCACGCAACAATGCAATTTCAAACTTGTGCTTCCAAAAGTAACAACCTTAGCTCCACGCCAGTTGGCTGCTTCATATCCGACTATTGTCTCTGA 1434 0.4477 MADAHETDKNIEVWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWENLDMSRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRTFDDFSDDDAGKEVKIPAPVIEGVAHAPAAPALYPPPVVLHDAMPQESYVLIPVTVLYDLLLPQASKLACRLSSSALYTHATMQFQTCASKSNNLSSTPVGCFISDYCL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272233g00005 477 Gene3D eRF1 domain 2 136 277 IPR042226 -
Stsc272233g00005 477 SMART eRF1_1_2 4 140 IPR005140 -
Stsc272233g00005 477 Gene3D eRF1 domain 1 1 135 IPR024049 -
Stsc272233g00005 477 SUPERFAMILY L30e-like 278 367 IPR029064 -
Stsc272233g00005 477 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 331 376 IPR004403 GO:0003747|GO:0006415
Stsc272233g00005 477 Pfam eRF1 domain 1 18 138 IPR005140 -
Stsc272233g00005 477 Pfam eRF1 domain 2 144 277 IPR005141 -
Stsc272233g00005 477 Gene3D - 331 381 IPR029064 -
Stsc272233g00005 477 Gene3D - 279 330 IPR029064 -
Stsc272233g00005 477 Pfam eRF1 domain 3 281 331 IPR005142 -
Stsc272233g00005 477 NCBIfam peptide chain release factor aRF-1 13 331 IPR004403 GO:0003747|GO:0006415
Stsc272233g00005 477 SUPERFAMILY Translational machinery components 142 276 - -
Stsc272233g00005 477 FunFam Eukaryotic peptide chain release factor subunit 1 2 135 - -
Stsc272233g00005 477 FunFam Eukaryotic peptide chain release factor subunit 1 136 277 - -
Stsc272233g00005 477 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272233g00005 Stsc-Chr272233 45102 48368 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272233g00005 1 375 Eukaryotic Initiation Factors Gene Family AT3G26618 81.776 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272233g00005 K03265 - csin:114283516 686.026