Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272233g00002 ATGATAAATGGAAAAGCCTCCGTCTCTAAGGAGCTTAATGCCAAGCACATCAAGATTTTAGAGGGAGTTGTTAAGCTACCTGACAATAGGGAATGTTCAGACTGCCAGAATAAGGCACCACGATGGGCAAGCGTGAACCTAGGAATTTTCATTTGCATGCAATGTTCAGGAATTCACCGAAGTCTTGGAGTACACATATCACAGGTGCGGTCTACAACTTTGGATACATGGTTGCCAGAACAAGTGTCTTTCATGCAACTTATGGGTAACGTGAATGCCAATAAGTTCTGGGAAGCAGAACTGCCGCCAAATTTTGACAGAAATGGATATGGAATCGACAAATTTATTCGTGCCAAGTATGTGGATAAAAAATGGGCTTCAAAACACGGTTTACAAGCAGCAACTGCAAAGTCATCTGAAACAATGAGGAATAATCATCAAAGGAATAGAAGATTGTCTCTTGAGGAACGCATCCTTGTTGGCCACATGCAACAAATTCATCGACAGCCTCCTCAGCAGCAAGGAACAAAATCTCACGAGATCCCGTTAGGTTTGGAAAGAAAGAAAAGTGCACCACAAGTGAAGATCAGGGCGCCATCCGCATCCCTTGATTTTGATAGCATCGCAAGAAATAGACATACAACTACCGTTGATCTTTTTGCCTTTCTTAACATCAACGATACTAATCAAAAGGTTGTCCTCTCATCAACTACAACTCCTACAAGCTGGACAACATTTGATTGA 744 0.4194 MINGKASVSKELNAKHIKILEGVVKLPDNRECSDCQNKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSTTLDTWLPEQVSFMQLMGNVNANKFWEAELPPNFDRNGYGIDKFIRAKYVDKKWASKHGLQAATAKSSETMRNNHQRNRRLSLEERILVGHMQQIHRQPPQQQGTKSHEIPLGLERKKSAPQVKIRAPSASLDFDSIARNRHTTTVDLFAFLNINDTNQKVVLSSTTTPTSWTTFD 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272233g00002 247 Pfam Putative GTPase activating protein for Arf 19 128 IPR001164 GO:0005096
Stsc272233g00002 247 CDD ArfGap 20 120 - -
Stsc272233g00002 247 SUPERFAMILY ArfGap/RecO-like zinc finger 18 127 IPR037278 -
Stsc272233g00002 247 SMART arf_gap_3 14 133 IPR001164 GO:0005096
Stsc272233g00002 247 Gene3D Arf GTPase activating protein 3 133 IPR038508 -
Stsc272233g00002 247 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Stsc272233g00002 247 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Stsc272233g00002 247 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Stsc272233g00002 247 ProSiteProfiles ARF GTPase-activating proteins domain profile. 14 133 IPR001164 GO:0005096
Stsc272233g00002 247 FunFam stromal membrane-associated protein 1 isoform X1 2 131 - -
Stsc272233g00002 247 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 3 247 IPR044520 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272233g00002 Stsc-Chr272233 17513 21539 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272233g00002 27 120 C2H2 Transcription Factor Family AT4G05330 50.000 2.59e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272233g00002 K12486 - gmx:100802691 297.36