Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272231g00003 ATGGATTATGTGAATTTGGATTGCCTCATACTAGTGGATCATCTTTGTGAAGATCCTGAGCAGATTTCACTAAAATGTAACAATGTTGGAGTGGAACAACCATATGATGATCCTATGAATCCATCTTCTAAACCATGCCCTCTAAATTCTGTTATTGAAGAGGTGCCAGATCATAGTCACATATCAGATGATGAAATTCCTAGAACAGGCATGTATTTTGATTCTTTGGAGGAAGCTCATGATTTTTACAAGAATTATGCGGAGAAAGTGGGATTTCTTATTAAGATTAGGAATACAAATCATGTTAAGAATGCTAAGGGTGAGAAGATTCCAATTAATCAGTCAATCCATTGTAATCGAGACGGTAATCGCATGTCACGAGCGAAGGCACCAAGAAGATCGAAGAAGATCGCGGCTGCCATGTGCAATGCAAGGGTGTATGTCAAGTTTAACAAAGACAATAGTAAATGGTTTCCAAAATTTGGACCAATATAG 495 0.3758 MDYVNLDCLILVDHLCEDPEQISLKCNNVGVEQPYDDPMNPSSKPCPLNSVIEEVPDHSHISDDEIPRTGMYFDSLEEAHDFYKNYAEKVGFLIKIRNTNHVKNAKGEKIPINQSIHCNRDGNRMSRAKAPRRSKKIAAAMCNARVYVKFNKDNSKWFPKFGPI 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272231g00003 164 Pfam FAR1 DNA-binding domain 81 157 IPR004330 -
Stsc272231g00003 164 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 51 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272231g00003 Stsc-Chr272231 14217 14998 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc272231g00003 FAR1 2.6e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272231g00003 - - ahf:112772717 125.561