Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272228g00003 ATGGAAGGATGTCCGAGGACAATGAGAATACGAACCAACATGAATGATGTCGATCCGAGTCTTTCGAGAAGTAACACTAACGATCTTCCTCACTTCTCACTCAATCTCAAATCAAAAGAAACCCTAGCAGAGCTCCAATTCATCACCGGCACCGGCACCGACACCGACACCAACACCGACACCGGCGCCACTACCATCATCACTACAAGGTGTCTCTCTCTCGATCTCTCTCCGAAGCAGATTCATGAGATTAAGGATTTCCTTCTAACTGCAAGGAGGAAGGATGCACGATCGGTGAAGATAAAGAGGAGCAGAGATGTGGTGAAGTTCAAGGTTCGATGCTCCAAGTACCTCTACACGCTCTGTGTCTGA 372 0.4812 MEGCPRTMRIRTNMNDVDPSLSRSNTNDLPHFSLNLKSKETLAELQFITGTGTDTDTNTDTGATTIITTRCLSLDLSPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272228g00003 123 Gene3D - 77 123 IPR038464 -
Stsc272228g00003 123 PANTHER 60S RIBOSOMAL PROTEIN L38 78 123 IPR002675 GO:0003735|GO:0005840|GO:0006412
Stsc272228g00003 123 Pfam Ribosomal L38e protein family 78 123 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272228g00003 Stsc-Chr272228 14289 14981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272228g00003 78 123 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 93.478 9.20e-27 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272228g00003 K02923 - csav:115720933 96.2857