Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272227g00003 ATGGCCAACTTCTCGAATCTATTCATGATCATGTTCATCATCAACAACTTTGCAGCCACAAAAGCACAAGGTCCTAACTATCTCTTCGTATATTGCATACTTGAAAATTTCACACCTAATAGCACTTACCAAAAAAACCTTAGAACTCTCTACTCTTCTTTATCTTCCAAAGCCAACAACAGCTTCGAATTTTACAACACCACCGTCTCCGGCGCCGTCCCCGATGACACAGCTTATGGAATGTTCATGTGTAGGGGGGACACACCCTCCGATCAATGCGGAGCGTGTGTCCAAAACGCAACCCTAACGCTTTCAAACAAAGATTGCAACTCCTCCATAGAAGGCTTGATATGGTACGATCAATGCATGGTTAGGTATTCACACACTTACTTCTTCTCCAAGCTAGCCAAAGAGCCATTCAAGGAGTATGTTAGTCCTACCAAGCAGGTTTATCAAGAAACTTTCAATAGAACCTTGCTTGAGACGCTGAATAAAACGGCGGACGAGGCCGCAAAAGCGCCGATCGGAAAGAAAAAGTTTGCGACGGAGGAAGCGAATTTGCCGGTGTTTCAGAAGCTTTACTGTTTGGCTCAGTGCACACCGGATTTGTCACCACAGGATTGTAGGAGTTGTTTGAATCTTTCTATAAATGAAAATGTTCCAAGGTGTTGTGCCGGGAGAGAAGGAGCTAGGGTTTTGTATCCAAATTGCATGATTAGGTTTGAGCTTTATCCTTTCTATGGATCCCTATCTTCCCCTTCTCCAGCACCAGCAGGTGTAACCACCACAGTTGGTCATGAAAGTACCACCTTAGAAGGATTGCAATTTGATTTGAACATACTTAAAGATGCTACCAACAACTTTTCACCGGAGAATCTTATTGGCAAGGGAGGATTTGGAGAAGTTTATAAGGGTATTCTTGTTGATGGACGAAGCATAGCTGTAAAAAGACTTAGTACAAGCTCTACACAAGATTTTGGTATGGCACGAATAGTTGATACTAATCAAGAAAAAGGAGAAACCAAGAGAATTGTTGGTACATACGGCTACATGTCTCCGGAATATGTAATGTTTGGACAATTTTCTGAAAAATCAGATGTCTTTAGTTTCGGAGTCATAATTCTAGAAATTATTTCTGGGAAAAAGAATACGCGTTTTCATGATTCATACGGAGAAGATCTTTTAAGTTATGTTTGGAGGCAATGGCAGGATGGAACACCTTTGAACCCATTGGATCCAAAGATGAAAGAAAAATATCATGAAGTGGAAGTGATGAAATGCATTCAAATTGGTTTATTATGTGTTCAAGATAATTCAAATGATAGACCATCAATGGTGACAGTTGTTTCATATCTTAATAATCTTTCTCTTGAATTACCATCTCCACATGAACCAGCATTCTTCAGTCATGGCAGATTCATGGATCCAAAAATCAGAAATGATTCAAGTTCAAGCCAATCTGCCAAGAGTTCCACATTATTTTCGGTCAATGAAATGTCTATAAGTACATTTCATCCTCGGTAG 1524 0.4016 MANFSNLFMIMFIINNFAATKAQGPNYLFVYCILENFTPNSTYQKNLRTLYSSLSSKANNSFEFYNTTVSGAVPDDTAYGMFMCRGDTPSDQCGACVQNATLTLSNKDCNSSIEGLIWYDQCMVRYSHTYFFSKLAKEPFKEYVSPTKQVYQETFNRTLLETLNKTADEAAKAPIGKKKFATEEANLPVFQKLYCLAQCTPDLSPQDCRSCLNLSINENVPRCCAGREGARVLYPNCMIRFELYPFYGSLSSPSPAPAGVTTTVGHESTTLEGLQFDLNILKDATNNFSPENLIGKGGFGEVYKGILVDGRSIAVKRLSTSSTQDFGMARIVDTNQEKGETKRIVGTYGYMSPEYVMFGQFSEKSDVFSFGVIILEIISGKKNTRFHDSYGEDLLSYVWRQWQDGTPLNPLDPKMKEKYHEVEVMKCIQIGLLCVQDNSNDRPSMVTVVSYLNNLSLELPSPHEPAFFSHGRFMDPKIRNDSSSSQSAKSSTLFSVNEMSISTFHPR 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272227g00003 507 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Stsc272227g00003 507 Gene3D Transferase(Phosphotransferase) domain 1 327 470 - -
Stsc272227g00003 507 ProSiteProfiles Gnk2-homologous domain profile. 25 131 IPR002902 -
Stsc272227g00003 507 Pfam Salt stress response/antifungal 152 244 IPR002902 -
Stsc272227g00003 507 Pfam Salt stress response/antifungal 35 128 IPR002902 -
Stsc272227g00003 507 SUPERFAMILY Protein kinase-like (PK-like) 277 476 IPR011009 -
Stsc272227g00003 507 ProSiteProfiles Gnk2-homologous domain profile. 137 246 IPR002902 -
Stsc272227g00003 507 ProSiteProfiles Protein kinase domain profile. 129 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272227g00003 507 Gene3D Phosphorylase Kinase; domain 1 261 326 - -
Stsc272227g00003 507 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 324 - -
Stsc272227g00003 507 Pfam Protein tyrosine and serine/threonine kinase 325 451 IPR001245 GO:0004672|GO:0006468
Stsc272227g00003 507 Gene3D - 140 246 IPR038408 -
Stsc272227g00003 507 Gene3D - 25 131 IPR038408 -
Stsc272227g00003 507 FunFam Cysteine-rich receptor-like protein kinase 25 140 246 - -
Stsc272227g00003 507 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 25 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272227g00003 Stsc-Chr272227 24841 28525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272227g00003 22 507 Receptor kinase-like Gene Family AT4G23280 33.498 6.72e-93 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc272227g00003 PK_Tyr_Ser-Thr 1.8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272227g00003 - - vum:124825842 550.436