Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272227g00001 ATGGGTTCGAAACCGTGGCTCTACCCTGCTCCTTCGTATCGGCCATTAGAGACGTTTTGGGACACCGATGAAGACGCGCCGGGCCCACGATGCGGCCACACACTCACCGCCGTTGCCGCCACCAAGTCTCACGGACCAAGGCTCATCCTTTTCGGCGGCGCCACCGCCATCGAGGGAGGATCTTCCTCAGCTCCTGGAATCAGGTTAGCTGGAGTTACAAATTCGGTTCATTCGTATGATGTTCTAACGAGAAAATGGACTAGTCTTAAGCCTGCCGGAGAGCCGCCATCCCCTCGGGCAGCTCATGCTGCGGCCGCAGTTGGGACTATGGTTGTTTTTCAGGGTGGCATTGGTCCTGCCGGGCATTCTACCGATGATCTCTACGTGCTTGACATGACCAATGATAAATTCAAATGGCATAGAGTTGTTGTACAAGGGCAAGGGCCCGGTCCTCGCTATGGCCATGTAATGGACTTGGTTGCTCAGAGATATCTCGTTACTGTCAGCGGAAATGATGGTAAAAGAGTTGTTTCTGATGCGTGGGCTTTGGATACTGCACAGAAACCTTACATGTGGCAAAAGTTGAACCCCGAAGGTGATAGACCTTCTGCTAGAATGTATGCTACTGCTAGTGCTCGTTCAGATGGAATGTTTTTGCTTTGTGGTGGAAGAGACTCTTCTGGGACGCCACTAGCAGATGCATATGGACTGCTCATGCATAGGAACGGTCAGTGGGAATGGACACTTGCGCCTGGAGTTTCCCCTTCACCGAGGTATCAACATGCTGCGGTTTTTGTTGGTGCACGATTGCACGTTACAGGAGGGGTTCTCAAAGGTGGACGGGCTGTAGAAGGTGAAGCGGCCATTGCAGTACTTGACACTGCTGCTGGGGTTTGGTTGGATAGAAATGGCATTGTGGCCTCGTCACGCCCAAATAAAGGTCATGATTATGATCATCATTTGGAGCTTTTGCGTCGTTGTCGCCATGCAGCAGCGGCCGTTGGTGTTCGTATATACATATACGGTGGTCTTAGAGGAGATACTCTACTAGATGATTTATTAGTGGCAGAAAACTCACCCTTCCAACCTGACAGTAATTCCCCTGTGTTAACATCTGAGAGAACTTCACCTATTACAAGCCCTAAATTCAGCGTGTCTAACGTAAATTATAATGTAGCACCACGAAGTTCAGATTCTGGACCAGATGTTCCCTCATCTGGTGGCTTAGGAATGGACAGAAACTCCATGGAGAAACTTAGGGAAGCATCAGCTGCAGAAGCTGAGGTAGCAAATGCAGTCTGGCAAGCTGTGCAGGCATCAAACAGTCCTGCTGAAGAGTCATTGCTGTCAGATGACAACTCACATGCCGCAGAAACAGTTTCAGATGGCAGTGACACAGAAGGCGATGTTCGCCTTCATCCCAGAGCTGTTGTAGTTGCTAAAGAGGCCGTAGGTAACCTAGGTGGAATGGTGAGACAGCTATCGCTGGATCAATTTGAAAATGAAAGCAGACGCATGGTTCCTGTAAATAATGATACACCATATCCTACCAAAAAATTCACTAGGCAGAAATCTCCTCAGGGATTACATAAAAAGATAATTTCGAATTTGCTTAGGCCACGCAACTGGAAAGCACCTGCAAACAGACGATTCTTCTTGGATTCTTATGAAGTTGGTGAATTATGCTATGCTGCCGAGCAANNNNNNNNNNCAACTGTTCTTCAGTTAAAAGCTCCCGTCAAAGTATTTGGGGATCTTCATGGTCAGTTTGGTGATTTGATGCGACTATTTGATGAATATGGATTCCCTTCAACTGCGGGAGACATCACGTATATTGACTATCTGTTTTTGGGAGATTATGTTGATAGAGGACAGCACAGCTTGGAAACCATTACCTTGTTGCTTGCACTTAAGATTGAGTATCCTGAGAATGTTCACTTGATACGTGGTAACCATGAAGCTGCTGACATAAATGCACTATTTGGTTTTCGTATTGAGTGTATCGAAAGGATGGGAGAAAATGATGGAATCTGGGCATGGACAAGGTTCAATCAACTTTTCAACTATCTTCCACTTGCTGCTCTTATTGAAAAGAAAATTATATGCATGCATGGTGGCATTGGAAGGTCAATCAATTCTGTAGAACAGATAGAGAGGCTCGAAAGACCCATAACAATGGATGCAGGATCTATTATTTTAATGGACCTTCTGTGGTCTGATCCGACCGAAAATGATAGTGTAGAGGGTTTGAGACCAAATGCCAGAGGACCAGGTCTTGTCACTTTTGGGCCTGACCGTGTAACCGAGTTCTGCAAGAAAAATAAACTACAGCTAATTATAAGGGCCCATGAATGTGTCATGGATGGCTTCGAACGATTCGCACAGGGACAACTGATTACACTTTTTTCTGCAACTAACTATTGTGGAACGGCAAACAATGCTGGTGCCATACTGGTTGTTGGCCGGGGCTTGGTAGTGGTTCCAAAATTGATCCACCCCCTACCACCACCCCTTCAGTCTCCGGAGACATCTCCGGAGCGTGTCATGGATGAGACATGGATGCAGGAACTTAATATTCAGAGGCCACCAACTCCGACACGCGGCCGACCGCAGCCAGACCTTGACCGCGGCTCACTAGCATACATATGA 2649 0.4707 MGSKPWLYPAPSYRPLETFWDTDEDAPGPRCGHTLTAVAATKSHGPRLILFGGATAIEGGSSSAPGIRLAGVTNSVHSYDVLTRKWTSLKPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDMTNDKFKWHRVVVQGQGPGPRYGHVMDLVAQRYLVTVSGNDGKRVVSDAWALDTAQKPYMWQKLNPEGDRPSARMYATASARSDGMFLLCGGRDSSGTPLADAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFVGARLHVTGGVLKGGRAVEGEAAIAVLDTAAGVWLDRNGIVASSRPNKGHDYDHHLELLRRCRHAAAAVGVRIYIYGGLRGDTLLDDLLVAENSPFQPDSNSPVLTSERTSPITSPKFSVSNVNYNVAPRSSDSGPDVPSSGGLGMDRNSMEKLREASAAEAEVANAVWQAVQASNSPAEESLLSDDNSHAAETVSDGSDTEGDVRLHPRAVVVAKEAVGNLGGMVRQLSLDQFENESRRMVPVNNDTPYPTKKFTRQKSPQGLHKKIISNLLRPRNWKAPANRRFFLDSYEVGELCYAAEQXXXXTVLQLKAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRIECIERMGENDGIWAWTRFNQLFNYLPLAALIEKKIICMHGGIGRSINSVEQIERLERPITMDAGSIILMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVTEFCKKNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPPLQSPETSPERVMDETWMQELNIQRPPTPTRGRPQPDLDRGSLAYI 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272227g00001 882 PRINTS Serine/threonine phosphatase family signature 579 606 IPR006186 GO:0016787
Stsc272227g00001 882 PRINTS Serine/threonine phosphatase family signature 715 742 IPR006186 GO:0016787
Stsc272227g00001 882 PRINTS Serine/threonine phosphatase family signature 685 711 IPR006186 GO:0016787
Stsc272227g00001 882 PRINTS Serine/threonine phosphatase family signature 775 795 IPR006186 GO:0016787
Stsc272227g00001 882 PRINTS Serine/threonine phosphatase family signature 797 813 IPR006186 GO:0016787
Stsc272227g00001 882 PRINTS Serine/threonine phosphatase family signature 647 671 IPR006186 GO:0016787
Stsc272227g00001 882 PRINTS Serine/threonine phosphatase family signature 614 641 IPR006186 GO:0016787
Stsc272227g00001 882 SUPERFAMILY Kelch motif 70 356 IPR015915 GO:0005515
Stsc272227g00001 882 Gene3D - 195 385 IPR015915 GO:0005515
Stsc272227g00001 882 PIRSF STPPP_BSU1 1 882 IPR012391 GO:0004721|GO:0009742
Stsc272227g00001 882 SMART pp2a_7 553 837 IPR006186 GO:0016787
Stsc272227g00001 882 MobiDBLite consensus disorder prediction 389 413 - -
Stsc272227g00001 882 MobiDBLite consensus disorder prediction 443 461 - -
Stsc272227g00001 882 FunFam Serine/threonine-protein phosphatase 9 192 - -
Stsc272227g00001 882 ProSitePatterns Serine/threonine specific protein phosphatases signature. 648 653 IPR006186 GO:0016787
Stsc272227g00001 882 MobiDBLite consensus disorder prediction 443 471 - -
Stsc272227g00001 882 FunFam Serine/threonine-protein phosphatase 518 855 - -
Stsc272227g00001 882 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 8 882 - -
Stsc272227g00001 882 MobiDBLite consensus disorder prediction 389 403 - -
Stsc272227g00001 882 Gene3D - 9 194 IPR015915 GO:0005515
Stsc272227g00001 882 MobiDBLite consensus disorder prediction 856 877 - -
Stsc272227g00001 882 Gene3D - 512 852 IPR029052 -
Stsc272227g00001 882 Pfam Kelch motif 96 133 - -
Stsc272227g00001 882 Pfam Calcineurin-like phosphoesterase 579 786 IPR004843 GO:0016787
Stsc272227g00001 882 SUPERFAMILY Metallo-dependent phosphatases 540 843 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272227g00001 Stsc-Chr272227 1020 8299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272227g00001 580 778 Calmodulin-binding Proteins AT5G63870 32.609 1.21e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272227g00001 K01090 - gmx:100805538 1604.34