Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272224g00001 ATGGAAACAACCTGCGTGGATACTTCTCTCGCCCTCAACGTTGTTCCTCTCCACCACATGGGGGTTACGCCTGAGGTATTGGTTGAAGAGTTGCATCGGCTAAGTTGTGAGAATAAGAAGCTAACAGAGACACTGAAGGAAGTGTGTGATAACTATCTTGCCTTGAAAACCAAGCTCAGCCAACTGAGCAACAACAATAACACGGTGAGTTCCGAGAAAGAAGCGGGTTCGCCAACGCGGAAGAGAAAGACGGAGTGTGAGAGCTGCATGAGTGGCTATACTGATCAGTTCAATACCCTAACTAGTACGTACGAAGAGACAATCAAAAGAGTTAAGCATGAGGGTTCGCCAAAGGTTTCCAAGATTGTTGTGCGAACTGAAGCATCTGATACTACTAGCTTATATGTGAGGGATGGATATCAGTGGAGAAAATATGGGCAGAAAGTGACCCGAGATAACCCCTCTCCTAGGGCTTACTTCAGGTGCTCCTATGCCCCAAACTGCCCTGTCAAGAAGAAGGTGCAAAGGAGTGCAGAAGATCGAAGAATGCTGGTGGCAACATACGAAGGAGAGCACAACCATGAGCAAGTGCAAGATCCTTATTATTCATCATCAAGCCTGCAGCAAAGTGATCATTGTGAAAGCCCTACTAGAGTTGACTTAGTCAAGAAGTCAGAATTATCAGAATCGTTTGACATTAACAATAATAATGCAGAAAAGTCATGTATGCGGATGCAGCGCCAGCTGTTAGCTCAACAAATGGCCACTTCTTTGACTAAGGATCCCAATTTCACAGCCGCACTTGCAACCGCCATTACAGGAAGAATTCTATCTTCTCCACGCTTCTCTCAATAA 855 0.4538 METTCVDTSLALNVVPLHHMGVTPEVLVEELHRLSCENKKLTETLKEVCDNYLALKTKLSQLSNNNNTVSSEKEAGSPTRKRKTECESCMSGYTDQFNTLTSTYEETIKRVKHEGSPKVSKIVVRTEASDTTSLYVRDGYQWRKYGQKVTRDNPSPRAYFRCSYAPNCPVKKKVQRSAEDRRMLVATYEGEHNHEQVQDPYYSSSSLQQSDHCESPTRVDLVKKSELSESFDINNNNAEKSCMRMQRQLLAQQMATSLTKDPNFTAALATAITGRILSSPRFSQ 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272224g00001 284 MobiDBLite consensus disorder prediction 197 214 - -
Stsc272224g00001 284 FunFam WRKY transcription factor 40 120 198 - -
Stsc272224g00001 284 ProSiteProfiles WRKY domain profile. 131 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272224g00001 284 Coils Coil 31 51 - -
Stsc272224g00001 284 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 25 276 IPR044810 GO:0003700
Stsc272224g00001 284 MobiDBLite consensus disorder prediction 190 214 - -
Stsc272224g00001 284 SUPERFAMILY WRKY DNA-binding domain 133 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272224g00001 284 SMART WRKY_cls 136 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272224g00001 284 Pfam WRKY DNA -binding domain 138 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272224g00001 284 Gene3D WRKY domain 118 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272224g00001 Stsc-Chr272224 11441 13919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272224g00001 3 276 WRKY Transcription Factor Family AT1G80840 44.333 6.72e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc272224g00001 WRKY 2.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272224g00001 - - gmx:100127373 276.174