Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272223g00003 ATGGGTCCACACCAATTCTTCAACGATAAATTCTTAGGGGGTGGACCTTTCATGTTGAAACGATCCATGTCATTTTCAGGGATGGAGAACAAGTGTGGCGGCGACGGGGACGACGACTTATCAGACGATGGGTTCGGGTTCCAATTTGGGGAGAAGAAAAAGAGGCTGAACATTGAGCAAGTGAAAGTGCTTGAGAAGAGTTTTGAGTTAGGAAACAAGCTCGAACCCGAGAGAAAGGTGCAACTTGCTAAGGCCCTTAACTTGCAACCGAGACAAATTGCTATTTGGTTTCAGAATAGAAGAGCAAGGTGGAAGACTAAGCAACTTGAAAGGGAATATGAATCTCTTAAGAGGCAGTTTGAAGCATTGAAGGTTGATAATGATGCACTTAGGTTGCACAATCAGAAATTACAAGCTGAG 420 0.4381 MGPHQFFNDKFLGGGPFMLKRSMSFSGMENKCGGDGDDDLSDDGFGFQFGEKKKRLNIEQVKVLEKSFELGNKLEPERKVQLAKALNLQPRQIAIWFQNRRARWKTKQLEREYESLKRQFEALKVDNDALRLHNQKLQAE 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272223g00003 140 Gene3D - 50 114 - -
Stsc272223g00003 140 Pfam Homeodomain 52 105 IPR001356 GO:0003677
Stsc272223g00003 140 CDD homeodomain 52 108 IPR001356 GO:0003677
Stsc272223g00003 140 Pfam Homeobox associated leucine zipper 107 140 IPR003106 GO:0006355|GO:0043565
Stsc272223g00003 140 Coils Coil 99 140 - -
Stsc272223g00003 140 ProSiteProfiles 'Homeobox' domain profile. 47 107 IPR001356 GO:0003677
Stsc272223g00003 140 FunFam Homeobox-leucine zipper protein ATHB-13 42 111 - -
Stsc272223g00003 140 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 21 140 IPR045224 GO:0003700
Stsc272223g00003 140 SMART HOX_1 50 111 IPR001356 GO:0003677
Stsc272223g00003 140 SUPERFAMILY Homeodomain-like 36 109 IPR009057 -
Stsc272223g00003 140 ProSitePatterns 'Homeobox' domain signature. 82 105 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272223g00003 Stsc-Chr272223 47594 48683 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272223g00003 3 140 Homeobox Transcription Factor Family AT5G15150 61.935 3.04e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc272223g00003 Homeodomain 6.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272223g00003 K09338 - gmx:100783460 197.593