Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272223g00002 ATGCTTCTCCGGAAATCATCATTATCAACAGCATCGTCCATGGAGTTTAAAGTGAGGAGGAGTCCAGCAAAGATAGTGGCACCTGCAGGGCCAACTCCCCATGAGCTTAAGCTTCTCTCCGACATTGATGACCAACCTGGTCTTCGTCTCCACCTTCCATTGGTGCAGTTCTATTCTTACAACCCTTCAATGGCAAGAAAAGACCCTGTCCGTATCATTAGGGAAGCATTGTCCAAAGCACTTGTGTTCTATTATCCATTAGCTGGGAGGCTTAGGGAAGGAACTAATGGCAAACTTATGGTGGATTGCACTGCCGAAGGTGTTCCATTCATCGAAGCTGATGCAGATGTTACACTTGACCAGTTTGGTGTTGATATTATGCCTCCATTCCCTTGCTTTGATGAGCTCCTCTATCTTGCTCCATCTTTTGACATTGGAATTATTAACACTCCACTCCTGCTTATTCAGGTGACACGTCTGAAATGTGGTGGCTTTATATTTGCAATTCGTATGAACCACACAATGTTTGATGGAGCTGGAATGGGTCTATTCTTGAACGCCATTGCAGAAATAGCCCAAGGTGCATCAAAACCTTCGATCACCCCAGTGTGGTGTAGGGATCTTCTTTGTGCCAGAGACCCACCAAGAGTTACATCCCTCCTTCCTGAATACCAACAACAACAACAACCGGTTCATGACCACAAAAGTCTCTCCTCCTCCAAAGCTTGCAAGGCTTCCTTCTTCTTTGGCCCAAAAGAGATCGATGCATTGCGCCGCCTCTTCCCTCCTCACCTTGCTGATTCTTCCTCCACCTTCGAGGTCCTCACTGCATTACTGTGGCGTTGTCGTACAGCTGCAATGGATTGTCAAAACCCTAACCAAGAGGCTCACTTGATGTACACTGTCAGCGCGCGTTTTGGACCTGCCAGGTTTAATCCTCCACTACCTGAAGGTTATTATGGCAATACTTTTGTGAGACTTTGGGTAGTTTCCACCGTGGGGATGCTATGTGGGCAGCCGTTGAGCTATGCATTGGAGTTGGTGAAGAAATCCAAGAAAGAAGCAAGTGAAGAATATGTGCATTCTACTATCGATCAATTGGCCATTAAGGGAAGACCTCCCTTTACATTGGCACCAGGGACATTTGTGGTGTCAGATAACACAAAATCTGGATTTAGAGATGTGGATTTTGGATGGGATAAGCCTTTGTATTCTGGTCTTGCAGAGAATGAGAAGGCAGGTGCGAGTTTCTATTTTGCACATACTAACTCTAAAGGAGAGCATGGTAGACTGGTTTTCATTTGCCTGCTAGAAGAAGAGATGAAAAGGTTTGAGAAAGAGCTTAATGGAATATATACTTCACATCAACCATGA 1374 0.4527 MLLRKSSLSTASSMEFKVRRSPAKIVAPAGPTPHELKLLSDIDDQPGLRLHLPLVQFYSYNPSMARKDPVRIIREALSKALVFYYPLAGRLREGTNGKLMVDCTAEGVPFIEADADVTLDQFGVDIMPPFPCFDELLYLAPSFDIGIINTPLLLIQVTRLKCGGFIFAIRMNHTMFDGAGMGLFLNAIAEIAQGASKPSITPVWCRDLLCARDPPRVTSLLPEYQQQQQPVHDHKSLSSSKACKASFFFGPKEIDALRRLFPPHLADSSSTFEVLTALLWRCRTAAMDCQNPNQEAHLMYTVSARFGPARFNPPLPEGYYGNTFVRLWVVSTVGMLCGQPLSYALELVKKSKKEASEEYVHSTIDQLAIKGRPPFTLAPGTFVVSDNTKSGFRDVDFGWDKPLYSGLAENEKAGASFYFAHTNSKGEHGRLVFICLLEEEMKRFEKELNGIYTSHQP 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272223g00002 457 PANTHER ACYL TRANSFERASE 4 14 449 - -
Stsc272223g00002 457 Pfam Transferase family 19 447 - -
Stsc272223g00002 457 Gene3D - 12 223 IPR023213 -
Stsc272223g00002 457 Gene3D - 224 448 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272223g00002 Stsc-Chr272223 23733 25585 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272223g00002 14 448 Monolignol Biosynthesis Gene Families AT5G48930 31.320 7.20e-45 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272223g00002 K19861 K13610 gmx:100795237 548.125