Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272223g00001 ATGCTTCTCCGGAAATCATCATTATCATCAGCATTGTCCATGATGTTTAAAGTGAGGAGTCCAGCAAAGATAGTGGCACCTGCAGGGCCAACTCCCCATGAGCTTAAGCTTCTCTCCGACATTGATGACCAACCTGGTCTTCGTCTCCACCTTCCATTGGTGCAGTTCTATTCTTACAACCCTTCAATGGCAAGAAAAGACCCTGTCCGTATCATTAGGGAAGCATTGTCCAAAGCACTTGTGTTCTATTATCCATTAGCCGGGAGGCTTAGGGAAGGAACTAATGGCAAACTTATGGTGGATTGCACTGCCGAAGGTGTATTGTTCATCGAAGCTGATGCAGATGTTACACTTGACCAGTTTGGTGTTGATATTATGCCTCCATTCCCTTGCTTTGATGAGCTCCTCTATCTTGCTCCATCTTTTGACACTAGAATTATTAACACTCCACTCTTGGTTATTCAGGTGACACGTCTGAAATGTGGTGGCTTTATCTTTGCAATCCGTATGAATCGCACAATGTTTGATGGAGCTGGATTGGGTCTATTCTTGAACGCCATTGCAGAAATAGCCCGAGGTGCATTAAAACCTTCCATCACTCCAGTGTGGTGTCGGGATCTTCTTTGTGCCAGAGACCCACCAAGAGTTACATCCCTCCTCCCTGAATACCAGCAACAACAACAATCGGTTCATGACCACAGAACTCTCTCCTCCTCCAAAGCTTGCAAGGGTTACTTCTTCTTTGGCCCAAAAGAGATCGATGCATTGCGCCGCCTCTTCCCTCCTCACCTTGCTCATTCTTCCTCCACCTTCGAGGTTCTCACTGCATTCCTGTGGCGCTGTCGTACAGCTGCAATGGATTGTCAAAACCCTAACCAAGAGGCTCACTTGATGTACCCTGTCAGCGCGTGTTTTGGACCTGCCAGGTTTAATCCTCTACTACCTGAAGGTTATTATGGCAATACTTTTGTGGGACTTCGGATAGTTTCCACTGTGGGGATGCTATGTGGGCATCCGTTGAGCTATGTATTGGAGTTGGTGAAAAAATCAAAGAAAGAAGCAAGTGAAGAATATGTGCATTCTACTATCGATCGATTGGCCACTAAGGGAAGACCTCCCTTTACATCGGCACCAGGGACATTTGCGGTGTCAGATAACACAAAATATGAATTTAGAGATGTGAATTTCAGATGGGGTAAGCCTTTGTATTCTGGTCTTGCCGAGAGTGAAAAGGCAGGGGGTGTTCATGGTTCGGATCGGCCCAAGATTCGGTTCGATTTCGATGAAATTTGGGTCATTTTTGGCCCGACTTCGATGCAACCCGAATTAGGGTCTAAGCCAATAAAACCTACCCAATAA 1359 0.4606 MLLRKSSLSSALSMMFKVRSPAKIVAPAGPTPHELKLLSDIDDQPGLRLHLPLVQFYSYNPSMARKDPVRIIREALSKALVFYYPLAGRLREGTNGKLMVDCTAEGVLFIEADADVTLDQFGVDIMPPFPCFDELLYLAPSFDTRIINTPLLVIQVTRLKCGGFIFAIRMNRTMFDGAGLGLFLNAIAEIARGALKPSITPVWCRDLLCARDPPRVTSLLPEYQQQQQSVHDHRTLSSSKACKGYFFFGPKEIDALRRLFPPHLAHSSSTFEVLTAFLWRCRTAAMDCQNPNQEAHLMYPVSACFGPARFNPLLPEGYYGNTFVGLRIVSTVGMLCGHPLSYVLELVKKSKKEASEEYVHSTIDRLATKGRPPFTSAPGTFAVSDNTKYEFRDVNFRWGKPLYSGLAESEKAGGVHGSDRPKIRFDFDEIWVIFGPTSMQPELGSKPIKPTQ 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272223g00001 452 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 23 404 - -
Stsc272223g00001 452 Gene3D - 223 439 IPR023213 -
Stsc272223g00001 452 Pfam Transferase family 23 414 - -
Stsc272223g00001 452 Gene3D - 19 222 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272223g00001 Stsc-Chr272223 10886 14172 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272223g00001 14 405 Monolignol Biosynthesis Gene Families AT5G48930 30.732 7.66e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272223g00001 K19861 - gmx:100795237 477.248