Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272221g00001 ATGGAAGAGGAAGATCATGATCATCAAGAACGAGAACAAGAAGAAGTGGTTATGAGGCACGTGTGCAAGTTCTGCAACAAGAGCTTTCCTAGTGGCAGATCCTTAGGGGGTCACATGAGGTCTCACGTGACCAACAACAACTCTGAAGTAGCTGAAGAGAAAGAGAAGCTTTCATCATCTGAAGCTGGTGGAACAACAAACACTAACAACAGCAGTGGCTATGGTTTGAGGGAGAATCCAAAGAAGACTTGGAGGATCATTGCTGATTCAGCTAATAACACTGAAGACAACAACAATAACAATTCTTCTTCTTTCTCTTCTTTGTTGCTGTGTGACAAGCTTTGCAAAGAGTGTGGAAAAGGGTTCAGTTCTTGGAAGGCCTTGTTTGGCCACATGAAACGCCATTCTCATCACTCCTCTTCTGCTTCTGCCTCTGATCAAGATTCCTATTGGACAACGAAGAAGCTTCTTGTGATGGATTCACAGTCTGATAATGAAGCCACTACTGCTGCTGCAGCTGCTCCTCCAAGGAAGAGGACAAGGTCAAAGAGGAAAACAACAAGAAGGTATAATAACAATGCTACTGCTGCAACTAGTTTCACTGCCAAAGATTCTTCTTGTTCTGTTTACTCTGAGGTTGAGACTGAGATTGAGCAGGAGCAAGAGGAGGTTGCTTTGAGCTTGATGATGCTTAGTAGAGATGTTGGTAATTGGTGGGGTAGTACTGGTGCTGTTCTTCATTCTCTTGCTGAGTCTTCTGAGGTTGGAAGAGTAGGAAGAAGTGCAGAACTTTTGGATTTTGTTGCTGAAGAAAAGAATGTTGGATTTTCCATCAAGAAGGAAGCTGCTTTGGATTTGGATTTGGAGGATGCTGGATTTGAACATGGCAAGAGTCTGAGAGTCAATGGAACAGAATCCAACAAGTACAGTTCAATCAAGAAGCTTTCGAATTCGAATTCAGCCAAGAGGGGTAAGTTTGAGTGTGCTACTTGCCAGAGGATCTTCCATTCTTATCAAGCACTTGGAGGGCACAGAGCAAGTCACAAGAAGATTAAGATTGAGATTGAGATTGAGACTGAACTCTCTCCTAGCAACAAAATTCAGTGTGTGGAGAATGAAGAGCTTGGTTTTGATGATGATTATGATGATGAGGCTGAAGAAGAAGAAGAAGAAGATGAAGAGGAAGAGGAAGAAGAAGATAGCAAGACAGCAAAGAAGGTAAACAAAGTTCATGAGTGTCCAATTTGCCTGAAAGTTTTTTCTTCTGGACAAGCATTGGGTGGACACAAGAGATCTCNNNNNNNNNNATTAGGGTTAGGGATTTGCTTGATCTGA 1335 0.4217 MEEEDHDHQEREQEEVVMRHVCKFCNKSFPSGRSLGGHMRSHVTNNNSEVAEEKEKLSSSEAGGTTNTNNSSGYGLRENPKKTWRIIADSANNTEDNNNNNSSSFSSLLLCDKLCKECGKGFSSWKALFGHMKRHSHHSSSASASDQDSYWTTKKLLVMDSQSDNEATTAAAAAPPRKRTRSKRKTTRRYNNNATAATSFTAKDSSCSVYSEVETEIEQEQEEVALSLMMLSRDVGNWWGSTGAVLHSLAESSEVGRVGRSAELLDFVAEEKNVGFSIKKEAALDLDLEDAGFEHGKSLRVNGTESNKYSSIKKLSNSNSAKRGKFECATCQRIFHSYQALGGHRASHKKIKIEIEIETELSPSNKIQCVENEELGFDDDYDDEAEEEEEEDEEEEEEEDSKTAKKVNKVHECPICLKVFSSGQALGGHKRSXXXXLGLGICLI 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272221g00001 444 MobiDBLite consensus disorder prediction 378 406 - -
Stsc272221g00001 444 MobiDBLite consensus disorder prediction 28 78 - -
Stsc272221g00001 444 Coils Coil 378 407 - -
Stsc272221g00001 444 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 12 432 - -
Stsc272221g00001 444 Pfam C2H2-type zinc finger 19 42 - -
Stsc272221g00001 444 Pfam C2H2-type zinc finger 326 350 - -
Stsc272221g00001 444 Pfam C2H2-type zinc finger 410 432 - -
Stsc272221g00001 444 Pfam C2H2-type zinc finger 115 135 - -
Stsc272221g00001 444 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Stsc272221g00001 444 SUPERFAMILY beta-beta-alpha zinc fingers 114 348 IPR036236 -
Stsc272221g00001 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 47 IPR013087 -
Stsc272221g00001 444 SUPERFAMILY beta-beta-alpha zinc fingers 19 46 IPR036236 -
Stsc272221g00001 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 326 353 IPR013087 -
Stsc272221g00001 444 ProSitePatterns Zinc finger C2H2 type domain signature. 115 137 IPR013087 -
Stsc272221g00001 444 Gene3D Classic Zinc Finger 323 432 - -
Stsc272221g00001 444 MobiDBLite consensus disorder prediction 60 77 - -
Stsc272221g00001 444 Gene3D Classic Zinc Finger 4 73 - -
Stsc272221g00001 444 MobiDBLite consensus disorder prediction 162 195 - -
Stsc272221g00001 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Stsc272221g00001 444 ProSitePatterns Zinc finger C2H2 type domain signature. 328 348 IPR013087 -
Stsc272221g00001 444 MobiDBLite consensus disorder prediction 378 399 - -
Stsc272221g00001 444 SMART c2h2final6 326 348 IPR013087 -
Stsc272221g00001 444 SMART c2h2final6 113 135 IPR013087 -
Stsc272221g00001 444 SMART c2h2final6 411 431 IPR013087 -
Stsc272221g00001 444 SMART c2h2final6 20 42 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272221g00001 Stsc-Chr272221 3606 5495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272221g00001 404 432 C2H2 Transcription Factor Family AT1G26610 79.310 2.03e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc272221g00001 zf-C2H2_6 7e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272221g00001 - - aip:107619267 454.907