Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272220g00004 ATGGCTGGAACTGGAATTGTTCTGCTCTGCATTGCATCATCACTGGCTTCTCTCTTGGTCCCAACCACTGCTAGGATCTCCGGTGTTTACGCCGGTGGCCCTTGGCAGTCTGCTCATGCAACTTTCTATGGTGGCAGTGATGCCTCTGGAACTATGGGGGGTGCTTGTGGTTATGGAAACTTGTACAGTCAAGGGTACGGAGTGAACACAGCAGCACTGAGCACAACACTATTCAACGATGGCTTCAGCTGCGGCGCGTGTTTCGAGATCAAGTGCGACCAAGATCCCCGCTGGTGCAACCCCGGCAACCCTTCCATCCTAATAACCGCCACAAACTTTTGTCCACCCAATTTTGCTCTTCCCAGTGACGGTGGCGGCTGGTGCAACCCGCCAAGGCCGCACTTCGATCTTGCCATGCCAATGTTCCTCAAAATCGCTCAGTACCGCGCCGGAATCGTTCCTGTCGCCTACCGCCGGGTTCCATGTAGAAAAACAGGAGGCATCAGATTCACAATCAACGGCTTCCGTTACTTCAACCTGGTTCTGATCACCAACGTTGCGGGTGCAGGGGATATCGTGCGCGTGGATGTGAAGGGTACCAATACTGCGTGGACAAGCATGAGCCGCAACTGGGGGCAAAATTGGCAATCCAATGTGGTTTTGGTTGGCCAGGCTCTCTCCTTTAGGGTTACCGGCAGTGACAAACGCACCTCAACCTCATGGAACGTGGCACCACCTAATTGGCAGTTTGGACAAACCTTCACCGGCAAGAATTTCCGCGTCTAA 786 0.5369 MAGTGIVLLCIASSLASLLVPTTARISGVYAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTTLFNDGFSCGACFEIKCDQDPRWCNPGNPSILITATNFCPPNFALPSDGGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKTGGIRFTINGFRYFNLVLITNVAGAGDIVRVDVKGTNTAWTSMSRNWGQNWQSNVVLVGQALSFRVTGSDKRTSTSWNVAPPNWQFGQTFTGKNFRV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272220g00004 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Stsc272220g00004 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 167 IPR007112 -
Stsc272220g00004 261 Pfam Lytic transglycolase 70 157 IPR009009 -
Stsc272220g00004 261 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Stsc272220g00004 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Stsc272220g00004 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Stsc272220g00004 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Stsc272220g00004 261 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Stsc272220g00004 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Stsc272220g00004 261 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Stsc272220g00004 261 SMART dpbb_1 70 157 IPR007112 -
Stsc272220g00004 261 CDD DPBB_EXPA_N 34 162 - -
Stsc272220g00004 261 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Stsc272220g00004 261 Gene3D - 167 259 IPR036749 -
Stsc272220g00004 261 Gene3D - 21 163 IPR036908 -
Stsc272220g00004 261 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Stsc272220g00004 261 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Stsc272220g00004 261 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Stsc272220g00004 261 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Stsc272220g00004 261 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Stsc272220g00004 261 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Stsc272220g00004 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Stsc272220g00004 261 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Stsc272220g00004 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664
Stsc272220g00004 261 FunFam Expansin 24 163 - -
Stsc272220g00004 261 PANTHER EXPANSIN-A15 23 259 IPR002963 GO:0009664
Stsc272220g00004 261 FunFam Expansin 167 259 - -
Stsc272220g00004 261 SUPERFAMILY Barwin-like endoglucanases 34 185 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272220g00004 Stsc-Chr272220 17344 20679 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272220g00004 7 261 Expansin Gene Family AT2G39700 80.000 3.27e-154 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272220g00004 - - gmx:547955 497.278