Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272219g00006 ATGTCGAACACTGCTGGTCAAGTCATCAAGTGCAAAGCTGCGGTTGCATGGGAGGCAGCGAAGCCACTGGTGATTGAAGAAGTGGAGGTTGCGCCACCTAAGGCCGGTGAAGTCCGTTTGAAGATCCTCTACACCTCACTTTGCCACACCGATGTTTACTTCTGGGAAGCCAAGGGCCAGACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGTGTAGGAGAGGGAGTGACTCATCTGAAACCAGGTGACCATGCCCTCCCTGTGTTCACCGGAGAGTGCGGCGAATGCCCTCACTGCAAGTCTGAGGAGAGCAACATGTGTGACCTTCTCAGGATCAACACTGACAGGGGTGTCATGCTCCATGATCAAGAATCAAGATTCTCCATCAATGGAAAACCAATTTACCATTTTGTTGGGACCTCCACATTCAGTGAATACACTGTGGTTCATGCTGGATGTGTTGCAAAGATCAACCCTGAAGCACCACTTGACAAAGTTTGTGTCCTCAGCTGTGGGATCTGCACAGGTCTAGGTGCCACTATCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCTGTTTTCGGACTTGGAGCTGTTGGTCTTGCTGCTGCCGAAGGTGCAAGGATTTCTGGTGCATCAAGAATCATTGGGGTTGATTTAATTTCCAGCCGATTCGAATTAGCTAAGAAGTTTGGGGTTAATGAATTTGTGAACCCAAAAGATCATAACAAACCTGTACAAGAGGTAATTGCTGAAATGACCAATGGAGGCGTCGATCGTTCCGTTGAATGTACTGGCAGCATCCAGGCTATGATCTCTGCATTTGAATGTGTCCATGATGGTTGGGGTGTTGCTGTTCTTGTTGGTGTGCCAAGCAAAGATGATGCTTTCAAAACTCATCCTGTGAACTTCTTGAATGAGAGGACTCTCAAGGGTACCTTCTATGGTAACTACAAACCCAGAACTGATCTTCCTAATGTTGTGGAGAAGTACATGAAAGGGGAGTTGGAACTTGAGAAATTCATCACTCACACAGTTCCATTCTCAGAGATTAACAAGGCTTTTGATTTGATGCTGAAAGGAGAGTCCATCAGGTGCATCATTCGCATGGAGGAGTAA 1143 0.4663 MSNTAGQVIKCKAAVAWEAAKPLVIEEVEVAPPKAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMLHDQESRFSINGKPIYHFVGTSTFSEYTVVHAGCVAKINPEAPLDKVCVLSCGICTGLGATINVAKPKPGSSVAVFGLGAVGLAAAEGARISGASRIIGVDLISSRFELAKKFGVNEFVNPKDHNKPVQEVIAEMTNGGVDRSVECTGSIQAMISAFECVHDGWGVAVLVGVPSKDDAFKTHPVNFLNERTLKGTFYGNYKPRTDLPNVVEKYMKGELELEKFITHTVPFSEINKAFDLMLKGESIRCIIRMEE 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272219g00006 380 Pfam Zinc-binding dehydrogenase 206 336 IPR013149 -
Stsc272219g00006 380 SUPERFAMILY GroES-like 4 186 IPR011032 -
Stsc272219g00006 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Stsc272219g00006 380 FunFam alcohol dehydrogenase 1-like isoform X1 19 182 - -
Stsc272219g00006 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Stsc272219g00006 380 Gene3D - 20 370 - -
Stsc272219g00006 380 PANTHER ALCOHOL DEHYDROGENASE 6 376 - -
Stsc272219g00006 380 FunFam Alcohol dehydrogenase class-P 183 321 - -
Stsc272219g00006 380 CDD alcohol_DH_plants 9 377 - -
Stsc272219g00006 380 Gene3D - 183 321 - -
Stsc272219g00006 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 343 IPR036291 -
Stsc272219g00006 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272219g00006 Stsc-Chr272219 39031 41410 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272219g00006 37 370 Monolignol Biosynthesis Gene Families AT1G72680 25.816 3.52e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272219g00006 K18857 - gmx:100783858 716.842