Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272218g00008 ATGGCAGAGGAGACAGTTCCCAGAAAATCCAGCTGCTCCAACCACCCACTTCTCCAATGCGCGGATCTCATCCTTCCATGGCTGACCCCACCGGAGCTCGCCAACGTCTCCATCACCTCTACATCCCTCCGCAAGTCCTCCGCCTCCATTACCACCCTCCGATCCTCTGACGCTTCTAGAACCTTCGAGAGCCTTCCAGTCCCTTTCCACAACACCGTCGACCACCACCCCTACGCCTACTTCCTCTACACTCCTTCCCTCATCCTCCCCTCCGCCGCTTCCCTTCTCCTCCGTCAACCCTGGGGCTCCTCTGTTCCTCTCTCCTCCGCGCCGCGTTGTATCCCCGCGGAATCGGTGAGTTTGGTGGACGAGTTAGGTCAGAGCGTGCTGTCTGGTTGCGACTGCGAGTCTTGTGGTGATGTGGGTTCCGGCTGCCCTTGTTTGGGCCTTGGTGGGCTGGATGACGTGGGCAGTGAGTGCGGGCCGGGTTGTGGGTGCGGACCAGATTGCGGAAACCGGTTGACTCAGAATGGGGTTGCTGTTCGGGTGAAGATTGTGAGGGATGAAAGGAAAGGGTGGTGTTTGCATTCTGACCAGTGGATTCGAAAAGAGGAGTTCTTGTTTGAGTATGCAGGCGAACTCTTGACAACCAAGGAAGCACGGAGGAGACATCAATGTTACGATGAAATATCATCAAATGGTAGATTCTCTTCTGCACTTTTGGTTGTAAGGGAACATCTTCCATCTGGAAACGCATGCTTGAGATTGAATATTGATGCCACAAGAATAGGAAATGTTGCGCGGTTTGTTAATCATTCTTGTGATGGAGGTAACTTAAACACAAAGCTAATTAGAAGTTCAGGAGCTTTGTTCCCCCGCCTCTGCTTCTTTGCTTCGAAAGATATCCAGCAAGATGAAGAGCTTACGTTTAGCTATGGAGAAATCAGGAAAAAGGCCAATGGTCTGCCATGCTTCTGCGGTAGCCCTTCATGCTTTGGAACTTTGCCCTCGGAAGACACATGA 1023 0.5239 MAEETVPRKSSCSNHPLLQCADLILPWLTPPELANVSITSTSLRKSSASITTLRSSDASRTFESLPVPFHNTVDHHPYAYFLYTPSLILPSAASLLLRQPWGSSVPLSSAPRCIPAESVSLVDELGQSVLSGCDCESCGDVGSGCPCLGLGGLDDVGSECGPGCGCGPDCGNRLTQNGVAVRVKIVRDERKGWCLHSDQWIRKEEFLFEYAGELLTTKEARRRHQCYDEISSNGRFSSALLVVREHLPSGNACLRLNIDATRIGNVARFVNHSCDGGNLNTKLIRSSGALFPRLCFFASKDIQQDEELTFSYGEIRKKANGLPCFCGSPSCFGTLPSEDT 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272218g00008 340 Gene3D SET domain 35 321 IPR046341 -
Stsc272218g00008 340 SUPERFAMILY SET domain 65 333 IPR046341 -
Stsc272218g00008 340 SMART set_7 181 319 IPR001214 GO:0005515
Stsc272218g00008 340 Pfam SET domain 192 313 IPR001214 GO:0005515
Stsc272218g00008 340 ProSiteProfiles Post-SET domain profile. 320 336 IPR003616 -
Stsc272218g00008 340 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 44 329 - -
Stsc272218g00008 340 ProSiteProfiles SET domain profile. 181 313 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272218g00008 Stsc-Chr272218 34102 37490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272218g00008 159 335 C2H2 Transcription Factor Family AT2G23740 35.326 7.60e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc272218g00008 SET 2.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272218g00008 K11433 - gmx:100786871 462.996