Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272218g00001 ATGTTGTGGGTGGACAAGTACCGGCCCAAAACCCTAGACCAGGTTATGGTCCATGGTGACATTGCACAAAATCTCAAGAAATTGGTTACGGAACAGGACTGCCCCCATTTGCTCTTCTATGGACCATCTGGTTCTGGCAAGAAAACCCTAATAATGGCTCTTCTCCGCCAAATGTTTGGGCCTGGTGCTGAAAAGGTGAAGGTGGAAAACAGGACCTGGAAAGTGGATGCTGGTAGTAGGTCGATTGATCTTGAGCTGACGACACTATCAAGTGCCAACCACATTGAAATGAGTCCAAGTGATGCAGGTTTTCAGGATAGATACATTGTTCAAGAAATAATCAAAGAAATGGCTAAGAATAGACCCATTGATACTAAAGGGAAGAAAGGATTTAAAGTACTAGTGCTTAATGATGTGGACAAACTCTCTAGAGAAGCACAACATTCTCTCCGCCGAACCATGGAAAAGTACAGTGCTTATTGCAGATTGATTCTGTGTTGCAATAGTTCTTCAAGAGTCACAGAAGCTATCCGCTCTCGTTGTTTGAATGTGAGAATAAATGCACCAAGTGAAAATCAGATTGTTGAAGTTTTGGAATTCATTGGTAAGAAAGAAGGGCTGCAACTTCCTCCTGGTTTTGCTAGTCGCATAGCAGAGAAATCAAATCGAAATTTAAGGAGGGCCATATTGTCTATTGAGACTTGCCGTGTACAACAGTATCCTTTCACTGACAAACAAACAATTCCCCCAATGGACTGGGAGGAATATATTTCCGAAATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGTTGTTTCAAGTTCGAGGAAAGCTGTATGAGCTGCTAATCAATTGCATTCCCCCAGAGATCATTTTGAAGAGGCTTCTTTATGAACTGTTGAGGAAATTGGATTATGAACTAAAGCATGAAGTATGCCATTGGGCAGCATATTATGAACATAGAATGCGACTTGGACAGAAGGCCATTTTTCACATTGAAGCGTTTGTGGCTAAATTCATGAGCATTTACAAATCCTTCCTGATTTCAACATTCGGCTGA 1065 0.415 MLWVDKYRPKTLDQVMVHGDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGPGAEKVKVENRTWKVDAGSRSIDLELTTLSSANHIEMSPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSENQIVEVLEFIGKKEGLQLPPGFASRIAEKSNRNLRRAILSIETCRVQQYPFTDKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLRKLDYELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKSFLISTFG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272218g00001 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 3 342 - -
Stsc272218g00001 354 FunFam Replication factor C subunit 5 1 189 - -
Stsc272218g00001 354 SMART AAA_5 33 192 IPR003593 GO:0016887
Stsc272218g00001 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 240 IPR027417 -
Stsc272218g00001 354 CDD HLD_clamp_RFC 189 257 - -
Stsc272218g00001 354 Gene3D - 252 345 - -
Stsc272218g00001 354 CDD AAA 35 190 - -
Stsc272218g00001 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677|GO:0006260
Stsc272218g00001 354 FunFam Replication factor C subunit 3 252 345 - -
Stsc272218g00001 354 Pfam DNA polymerase III, delta subunit 20 188 - -
Stsc272218g00001 354 FunFam replication factor C subunit 3 190 248 - -
Stsc272218g00001 354 Gene3D - 1 189 IPR027417 -
Stsc272218g00001 354 Gene3D - 190 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272218g00001 Stsc-Chr272218 2242 6982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272218g00001 1 354 Core DNA Replication Machinery Family AT5G27740 85.311 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272218g00001 K10756 - gmx:100818329 675.241