Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272217g00002 ATGAGAACAATCACTTCAAGAGACAGTTTAGAAGTAGGCCAATCTATCCAAGATGGTGAGACTTTGGTTTCAGCTGGTGGAAGCTTTGAATTGGGTTTCTTTAGTCCTGGGGTTCCAACAAAACGTTACTTTGGTGTGTGGTACAGAGATTCAGATTCATCAGGGAATTCAACAGTTGTGTGGGTAGCAAACAGAGACATACCAATTCAAAGCAACTCATCAGGTGTTTTGAAACTCACAGAGAATGGGATTCTTCAGCTTCTGAATGGCAGCACTAACAGCACCATTTGGTCTTCCAACACCACAGGCAAGGCTTCGGGCGGCTCGATTGCAAAACTCTTGGATTCGGGGAATCTTGTAGTGCAAAATGGACAAAGTGCTGAGGAGGAAAACTTTTTGTGGCAAAGTTTTGATTATCCATGTGATACACTAATGCCAGGCATGAAGCTTGGATTGAACTTTGTTACTGGTTTTGAGTTTGACAGATCTTTGTCATCTTGGAAAAGTGCAGAGGATCCTGCTGTAGGAGAATATTCTATGAAGATTGATCCTAGAGGATATCCACAGATAATGGAATTCAAAGGATCTGTTAAATATTTCCGAAAAGGGCCATGGAATGGCCTTAATTTACCTGGATATCTAACCCCGGAAAATCAATATAGACATCATTTTGTACTGGACAAAACCCAGGTGTATTATGAGTTTGAAATACTTGATAGATCCATTTTCCTCCAGTATAAACTACAACCTTCAGGTAATAATATAGGCAGTGTTTGGAAGAAATATGAAACAAGAACTGAGGTGGCAGTTGTGGCAGTTCCCACAGTTGATGGATACAATGGGTGTGGAAGTTATGCCTTTTGTGGTTCAAATGCTATATGCATGGTTGATGCTGCTAGCATTGCAACATGTGAATGCCTAAAAGGATATGTTCCCAAGTTTCCCCAACAATGGGATATGTTAAATTGGTCTGATGGCTGTGTTAGGAAGAGTTCATTGAGTTGTAATAACACTAATAGCTTCTTAAGCTACTCAGAAATAAAAGTGCCAGACACTTCATCCTCATGGTATAACCAGACCATGAATCTTGAAGAATGTAATGAACATGGAAATTTGAAGAAAAAGGTGGGAATTGCAGTTGGTGTGATTATTTTCGGATTGATCTCATGTGTTAGCATAGTGATAATAAAAAAACCAGGATTTGCAAGAATAATTCAAAGAAATAGGCAAAGACAGAAGGTCACTGACCTACCAACATTTGATTTCTCAGTCTTAGTTAAAGCAACAGGCAACTTTTCATGTAGTAACAAAATTGGAGAAGGTGGTTTTGGATCAGTATACAAGGGCACACTAACAAATGGCGAAGAGTTAGCTGTGAAAAGGCTTTCAAAAAAGTCTAAACAAGGTTTAGAAGAGTTTAAAAATGAAGTGGTGTTGATAGCCAAACTTCAACATCGTAATCTTGTAAAGCTTCTTGGTTGTTGCATTCAAGGGGAAGAAAAAATATTGGTTTATGAATATATGCCGAACAAAAGCTTAGACTACTTTGTTTTCGATGAAGTCAGAAAAAGGACGCTAGATTGGATTAAGCGTTTCAACATCATGGATGGCATTGCTCGGGGACTTCTTTATCTTCATCAAGAATCTAGATTGAGGATTATTCACAGAGATCTAAAAACTAGTAATATTCTATTGGATGCAAATTTGAATCCTAAAATATCAGACTTTGGCCTAGCTCGGACATTCTTAGGGGATCAACTCGACGCTAACACAAACAGAGTAGCCGGAACATAG 1794 0.3868 MRTITSRDSLEVGQSIQDGETLVSAGGSFELGFFSPGVPTKRYFGVWYRDSDSSGNSTVVWVANRDIPIQSNSSGVLKLTENGILQLLNGSTNSTIWSSNTTGKASGGSIAKLLDSGNLVVQNGQSAEEENFLWQSFDYPCDTLMPGMKLGLNFVTGFEFDRSLSSWKSAEDPAVGEYSMKIDPRGYPQIMEFKGSVKYFRKGPWNGLNLPGYLTPENQYRHHFVLDKTQVYYEFEILDRSIFLQYKLQPSGNNIGSVWKKYETRTEVAVVAVPTVDGYNGCGSYAFCGSNAICMVDAASIATCECLKGYVPKFPQQWDMLNWSDGCVRKSSLSCNNTNSFLSYSEIKVPDTSSSWYNQTMNLEECNEHGNLKKKVGIAVGVIIFGLISCVSIVIIKKPGFARIIQRNRQRQKVTDLPTFDFSVLVKATGNFSCSNKIGEGGFGSVYKGTLTNGEELAVKRLSKKSKQGLEEFKNEVVLIAKLQHRNLVKLLGCCIQGEEKILVYEYMPNKSLDYFVFDEVRKRTLDWIKRFNIMDGIARGLLYLHQESRLRIIHRDLKTSNILLDANLNPKISDFGLARTFLGDQLDANTNRVAGT 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272217g00002 597 ProSiteProfiles Protein kinase domain profile. 432 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272217g00002 597 Gene3D Transferase(Phosphotransferase) domain 1 508 597 - -
Stsc272217g00002 597 Pfam S-locus glycoprotein domain 200 314 IPR000858 GO:0048544
Stsc272217g00002 597 SMART serkin_6 432 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272217g00002 597 Pfam D-mannose binding lectin 58 168 IPR001480 -
Stsc272217g00002 597 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 587 - -
Stsc272217g00002 597 SUPERFAMILY Protein kinase-like (PK-like) 413 597 IPR011009 -
Stsc272217g00002 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 553 565 IPR008271 GO:0004672|GO:0006468
Stsc272217g00002 597 Pfam Protein kinase domain 435 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272217g00002 597 Gene3D Phosphorylase Kinase; domain 1 400 507 - -
Stsc272217g00002 597 ProSiteProfiles EGF-like domain profile. 278 316 IPR000742 -
Stsc272217g00002 597 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 399 507 - -
Stsc272217g00002 597 CDD B_lectin 14 140 IPR001480 -
Stsc272217g00002 597 ProSitePatterns Protein kinases ATP-binding region signature. 438 460 IPR017441 GO:0005524
Stsc272217g00002 597 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 173 IPR036426 -
Stsc272217g00002 597 Gene3D - 3 137 IPR036426 -
Stsc272217g00002 597 ProSiteProfiles Bulb-type lectin domain profile. 7 134 IPR001480 -
Stsc272217g00002 597 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 2 137 - -
Stsc272217g00002 597 SMART blect_4 13 140 IPR001480 -
Stsc272217g00002 597 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 508 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272217g00002 Stsc-Chr272217 5915 8324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272217g00002 377 597 Receptor kinase-like Gene Family AT4G23190 56.277 3.37e-80 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc272217g00002 Pkinase 1.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272217g00002 - - adu:107464241 879.396