Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272217g00001 ATGCCTCCTGAGTATGTAGTACATGGACAATATTCAATGAAGTCTGATGTTTTTAGCTATGGTGTCATGGTACTAGAATTGATAAGTGGGAAGAAGAATAGAGAATTCTCAGATCCAGAAAACTACCTAAATCTTCTTGGACATGCATGGAGATTATGGACTGATGAGAGGTCATTGGAACTGCTAGATGAAGTGCTAAAGGAAGAATGCACACCACCTGAAGTAGCAAGATGCATTCAAGTGGGTTTGTTATGTGTGCAACAAAGACCAGAAGATAGGCCAGACATGTCATCAGTGGTTCTAATGTTGAAGGGTGAGAAACTACTGCCCAAGCCAAAGGTTCCTGGTTTTTATACTGAAAGTAGTGTTACACTTGAAGCAGATTGTTTGATGGAAAATCACACATTGTTCTCAGCCAATGAAATCTCCATCACATCATTATACGCAAGATAG 453 0.3974 MPPEYVVHGQYSMKSDVFSYGVMVLELISGKKNREFSDPENYLNLLGHAWRLWTDERSLELLDEVLKEECTPPEVARCIQVGLLCVQQRPEDRPDMSSVVLMLKGEKLLPKPKVPGFYTESSVTLEADCLMENHTLFSANEISITSLYAR 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272217g00001 150 Pfam Protein tyrosine and serine/threonine kinase 1 101 IPR001245 GO:0004672|GO:0006468
Stsc272217g00001 150 Gene3D Transferase(Phosphotransferase) domain 1 1 115 - -
Stsc272217g00001 150 ProSiteProfiles Protein kinase domain profile. 1 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272217g00001 150 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 132 - -
Stsc272217g00001 150 SUPERFAMILY Protein kinase-like (PK-like) 1 123 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272217g00001 Stsc-Chr272217 5290 5832 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272217g00001 1 150 Receptor kinase-like Gene Family AT4G23140 46.452 3.55e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc272217g00001 PK_Tyr_Ser-Thr 2.7e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272217g00001 - - aip:107614885 281.567